Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC39Q9UFE4 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC39Q9UFE4 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
CCDC39Q9UFE4 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
CCDC39Q9UFE4 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC18.64■□□□□ 0.57
CCDC39Q9UFE4 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC39Q9UFE4 RPL18-209ENST00000550645 463 ntTSL 5 BASIC18.64■□□□□ 0.57
CCDC39Q9UFE4 RPL18-214ENST00000552588 559 ntTSL 3 BASIC18.64■□□□□ 0.57
CCDC39Q9UFE4 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC18.64■□□□□ 0.57
CCDC39Q9UFE4 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
CCDC39Q9UFE4 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC18.64■□□□□ 0.57
CCDC39Q9UFE4 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC39Q9UFE4 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC39Q9UFE4 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC18.64■□□□□ 0.57
CCDC39Q9UFE4 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC39Q9UFE4 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC39Q9UFE4 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC39Q9UFE4 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC39Q9UFE4 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC18.64■□□□□ 0.57
CCDC39Q9UFE4 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC18.64■□□□□ 0.57
CCDC39Q9UFE4 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC39Q9UFE4 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC39Q9UFE4 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC39Q9UFE4 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC39Q9UFE4 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
CCDC39Q9UFE4 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
CCDC39Q9UFE4 BEX3-201ENST00000361298 921 ntTSL 2 BASIC18.63■□□□□ 0.57
CCDC39Q9UFE4 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC39Q9UFE4 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
CCDC39Q9UFE4 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC18.63■□□□□ 0.57
CCDC39Q9UFE4 FALEC-201ENST00000416894 566 ntTSL 3 BASIC18.63■□□□□ 0.57
CCDC39Q9UFE4 AC007967.2-201ENST00000432613 625 ntBASIC18.63■□□□□ 0.57
CCDC39Q9UFE4 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC39Q9UFE4 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC18.63■□□□□ 0.57
CCDC39Q9UFE4 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC18.63■□□□□ 0.57
CCDC39Q9UFE4 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
CCDC39Q9UFE4 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC18.63■□□□□ 0.57
CCDC39Q9UFE4 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC18.63■□□□□ 0.57
CCDC39Q9UFE4 BX640515.1-201ENST00000617215 977 ntBASIC18.63■□□□□ 0.57
CCDC39Q9UFE4 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC39Q9UFE4 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC39Q9UFE4 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CCDC39Q9UFE4 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC39Q9UFE4 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC39Q9UFE4 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
CCDC39Q9UFE4 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC39Q9UFE4 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC18.63■□□□□ 0.57
CCDC39Q9UFE4 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC39Q9UFE4 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC39Q9UFE4 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CCDC39Q9UFE4 CICP24-201ENST00000605464 2705 ntBASIC18.63■□□□□ 0.57
CCDC39Q9UFE4 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC39Q9UFE4 AC016027.1-202ENST00000607927 1699 ntBASIC18.63■□□□□ 0.57
CCDC39Q9UFE4 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC18.63■□□□□ 0.57
CCDC39Q9UFE4 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC39Q9UFE4 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC18.62■□□□□ 0.57
CCDC39Q9UFE4 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC39Q9UFE4 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC39Q9UFE4 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC39Q9UFE4 LBH-204ENST00000406087 559 ntTSL 4 BASIC18.62■□□□□ 0.57
CCDC39Q9UFE4 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC18.62■□□□□ 0.57
CCDC39Q9UFE4 MAL2-202ENST00000531508 892 ntTSL 3 BASIC18.62■□□□□ 0.57
CCDC39Q9UFE4 THTPA-204ENST00000554970 569 ntTSL 4 BASIC18.62■□□□□ 0.57
CCDC39Q9UFE4 THTPA-206ENST00000556015 535 ntTSL 3 BASIC18.62■□□□□ 0.57
CCDC39Q9UFE4 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC18.62■□□□□ 0.57
CCDC39Q9UFE4 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC18.62■□□□□ 0.57
CCDC39Q9UFE4 AC004877.2-201ENST00000623941 599 ntBASIC18.62■□□□□ 0.57
CCDC39Q9UFE4 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC39Q9UFE4 BCAR1-209ENST00000546196 1340 ntBASIC18.62■□□□□ 0.57
CCDC39Q9UFE4 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC39Q9UFE4 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC39Q9UFE4 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC39Q9UFE4 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC39Q9UFE4 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC39Q9UFE4 AC007292.2-201ENST00000593524 1812 ntBASIC18.62■□□□□ 0.57
CCDC39Q9UFE4 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC39Q9UFE4 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC39Q9UFE4 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC18.62■□□□□ 0.57
CCDC39Q9UFE4 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC18.62■□□□□ 0.57
CCDC39Q9UFE4 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC39Q9UFE4 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC39Q9UFE4 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CCDC39Q9UFE4 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC39Q9UFE4 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC39Q9UFE4 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC39Q9UFE4 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CCDC39Q9UFE4 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CCDC39Q9UFE4 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC39Q9UFE4 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC39Q9UFE4 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC39Q9UFE4 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC39Q9UFE4 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC39Q9UFE4 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC39Q9UFE4 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC18.61■□□□□ 0.57
CCDC39Q9UFE4 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC39Q9UFE4 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC39Q9UFE4 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC39Q9UFE4 AC025580.3-201ENST00000617932 1424 ntBASIC18.61■□□□□ 0.57
CCDC39Q9UFE4 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
CCDC39Q9UFE4 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms