Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDH9Q9HC56 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
PCDH9Q9HC56 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PCDH9Q9HC56 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
PCDH9Q9HC56 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
PCDH9Q9HC56 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PCDH9Q9HC56 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PCDH9Q9HC56 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC16.58■□□□□ 0.25
PCDH9Q9HC56 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
PCDH9Q9HC56 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC16.58■□□□□ 0.24
PCDH9Q9HC56 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
PCDH9Q9HC56 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC16.58■□□□□ 0.24
PCDH9Q9HC56 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC16.58■□□□□ 0.24
PCDH9Q9HC56 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC16.58■□□□□ 0.24
PCDH9Q9HC56 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PCDH9Q9HC56 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC16.58■□□□□ 0.24
PCDH9Q9HC56 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC16.58■□□□□ 0.24
PCDH9Q9HC56 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC16.58■□□□□ 0.24
PCDH9Q9HC56 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC16.58■□□□□ 0.24
PCDH9Q9HC56 AC027307.2-201ENST00000591252 911 ntBASIC16.58■□□□□ 0.24
PCDH9Q9HC56 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC16.58■□□□□ 0.24
PCDH9Q9HC56 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.58■□□□□ 0.24
PCDH9Q9HC56 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDH9Q9HC56 AC008267.7-201ENST00000624570 1194 ntBASIC16.58■□□□□ 0.24
PCDH9Q9HC56 AC105339.1-204ENST00000636249 355 ntBASIC16.58■□□□□ 0.24
PCDH9Q9HC56 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PCDH9Q9HC56 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDH9Q9HC56 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDH9Q9HC56 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDH9Q9HC56 AC006058.4-201ENST00000624016 1670 ntBASIC16.58■□□□□ 0.24
PCDH9Q9HC56 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDH9Q9HC56 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDH9Q9HC56 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDH9Q9HC56 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC16.58■□□□□ 0.24
PCDH9Q9HC56 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDH9Q9HC56 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
PCDH9Q9HC56 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDH9Q9HC56 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDH9Q9HC56 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PCDH9Q9HC56 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PCDH9Q9HC56 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 MIR1233-2-201ENST00000408138 82 ntBASIC16.57■□□□□ 0.24
PCDH9Q9HC56 MIR1233-1-201ENST00000408722 82 ntBASIC16.57■□□□□ 0.24
PCDH9Q9HC56 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 SPCS2P4-201ENST00000436160 681 ntBASIC16.57■□□□□ 0.24
PCDH9Q9HC56 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 RNF34-208ENST00000555076 593 ntTSL 3 BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 AC055717.3-201ENST00000622967 595 ntBASIC16.57■□□□□ 0.24
PCDH9Q9HC56 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 AC023157.3-201ENST00000619086 2088 ntBASIC16.57■□□□□ 0.24
PCDH9Q9HC56 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
PCDH9Q9HC56 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC16.56■□□□□ 0.24
PCDH9Q9HC56 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PCDH9Q9HC56 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDH9Q9HC56 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
PCDH9Q9HC56 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDH9Q9HC56 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PCDH9Q9HC56 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
PCDH9Q9HC56 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDH9Q9HC56 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDH9Q9HC56 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC16.56■□□□□ 0.24
PCDH9Q9HC56 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
PCDH9Q9HC56 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PCDH9Q9HC56 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms