Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 LBH-202ENST00000401506 485 ntTSL 3 BASIC20.26■□□□□ 0.83
SHANK3Q9BYB0 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC20.26■□□□□ 0.83
SHANK3Q9BYB0 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
SHANK3Q9BYB0 RNA5SP486-201ENST00000515961 83 ntBASIC20.26■□□□□ 0.83
SHANK3Q9BYB0 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
SHANK3Q9BYB0 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC20.26■□□□□ 0.83
SHANK3Q9BYB0 KLK11-210ENST00000600362 759 ntTSL 3 BASIC20.26■□□□□ 0.83
SHANK3Q9BYB0 BX539320.1-201ENST00000623759 877 ntBASIC20.26■□□□□ 0.83
SHANK3Q9BYB0 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
SHANK3Q9BYB0 AC080080.1-201ENST00000625121 2420 ntBASIC20.26■□□□□ 0.83
SHANK3Q9BYB0 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHANK3Q9BYB0 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SHANK3Q9BYB0 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SHANK3Q9BYB0 AL138799.1-201ENST00000448213 1675 ntBASIC20.25■□□□□ 0.83
SHANK3Q9BYB0 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SHANK3Q9BYB0 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHANK3Q9BYB0 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SHANK3Q9BYB0 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SHANK3Q9BYB0 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC20.25■□□□□ 0.83
SHANK3Q9BYB0 AL354877.1-201ENST00000424412 413 ntBASIC20.25■□□□□ 0.83
SHANK3Q9BYB0 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC20.25■□□□□ 0.83
SHANK3Q9BYB0 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC20.25■□□□□ 0.83
SHANK3Q9BYB0 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC20.25■□□□□ 0.83
SHANK3Q9BYB0 MIR3619-201ENST00000579667 83 ntBASIC20.25■□□□□ 0.83
SHANK3Q9BYB0 AC138627.1-207ENST00000641560 1006 ntBASIC20.25■□□□□ 0.83
SHANK3Q9BYB0 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHANK3Q9BYB0 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
SHANK3Q9BYB0 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SHANK3Q9BYB0 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SHANK3Q9BYB0 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHANK3Q9BYB0 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SHANK3Q9BYB0 AC011676.5-201ENST00000624864 2660 ntBASIC20.25■□□□□ 0.83
SHANK3Q9BYB0 KRT8P14-201ENST00000414254 1442 ntBASIC20.25■□□□□ 0.83
SHANK3Q9BYB0 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
SHANK3Q9BYB0 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC20.25■□□□□ 0.83
SHANK3Q9BYB0 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHANK3Q9BYB0 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
SHANK3Q9BYB0 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 AL391280.1-201ENST00000506969 1062 ntBASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 MIR5572-201ENST00000583188 137 ntBASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 NDUFV2P1-201ENST00000596415 907 ntBASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 AC091812.3-201ENST00000621362 345 ntBASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 NUS1P3-201ENST00000423502 862 ntBASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 AC005077.2-201ENST00000449786 690 ntBASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 RN7SL574P-201ENST00000581512 297 ntBASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SHANK3Q9BYB0 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC20.23■□□□□ 0.83
SHANK3Q9BYB0 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC20.23■□□□□ 0.83
SHANK3Q9BYB0 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
SHANK3Q9BYB0 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHANK3Q9BYB0 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHANK3Q9BYB0 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHANK3Q9BYB0 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC20.23■□□□□ 0.83
SHANK3Q9BYB0 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHANK3Q9BYB0 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC20.23■□□□□ 0.83
SHANK3Q9BYB0 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHANK3Q9BYB0 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SHANK3Q9BYB0 MPV17-205ENST00000402310 906 ntTSL 5 BASIC20.23■□□□□ 0.83
SHANK3Q9BYB0 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHANK3Q9BYB0 SERPINA13P-202ENST00000478994 924 ntBASIC20.23■□□□□ 0.83
SHANK3Q9BYB0 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC20.23■□□□□ 0.83
SHANK3Q9BYB0 RNF41-210ENST00000552244 716 ntTSL 3 BASIC20.23■□□□□ 0.83
SHANK3Q9BYB0 RN7SL713P-201ENST00000582127 302 ntBASIC20.23■□□□□ 0.83
SHANK3Q9BYB0 PRSS30P-206ENST00000641773 873 ntBASIC20.23■□□□□ 0.83
SHANK3Q9BYB0 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHANK3Q9BYB0 AC015818.8-201ENST00000587907 1519 ntBASIC20.23■□□□□ 0.83
SHANK3Q9BYB0 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms