Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC25.84■■□□□ 1.73
IFT140Q96RY7 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC25.84■■□□□ 1.73
IFT140Q96RY7 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC25.84■■□□□ 1.73
IFT140Q96RY7 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
IFT140Q96RY7 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC25.84■■□□□ 1.73
IFT140Q96RY7 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC25.84■■□□□ 1.73
IFT140Q96RY7 RPS15-201ENST00000233609 534 ntTSL 2 BASIC25.84■■□□□ 1.73
IFT140Q96RY7 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
IFT140Q96RY7 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC25.84■■□□□ 1.73
IFT140Q96RY7 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
IFT140Q96RY7 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
IFT140Q96RY7 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC25.84■■□□□ 1.73
IFT140Q96RY7 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC25.84■■□□□ 1.73
IFT140Q96RY7 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC25.84■■□□□ 1.73
IFT140Q96RY7 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC25.84■■□□□ 1.73
IFT140Q96RY7 RTN3P1-201ENST00000536295 711 ntBASIC25.84■■□□□ 1.73
IFT140Q96RY7 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
IFT140Q96RY7 RPS15-205ENST00000586686 562 ntTSL 5 BASIC25.84■■□□□ 1.73
IFT140Q96RY7 AC005357.2-202ENST00000590507 1060 ntBASIC25.84■■□□□ 1.73
IFT140Q96RY7 RPS15-208ENST00000591804 711 ntTSL 5 BASIC25.84■■□□□ 1.73
IFT140Q96RY7 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC25.84■■□□□ 1.73
IFT140Q96RY7 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC25.84■■□□□ 1.73
IFT140Q96RY7 AP001065.2-201ENST00000617205 644 ntBASIC25.84■■□□□ 1.73
IFT140Q96RY7 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC25.84■■□□□ 1.73
IFT140Q96RY7 AC120498.9-201ENST00000339021 3867 ntBASIC25.84■■□□□ 1.73
IFT140Q96RY7 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC25.83■■□□□ 1.73
IFT140Q96RY7 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
IFT140Q96RY7 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
IFT140Q96RY7 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC25.83■■□□□ 1.73
IFT140Q96RY7 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC25.83■■□□□ 1.73
IFT140Q96RY7 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
IFT140Q96RY7 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC25.83■■□□□ 1.73
IFT140Q96RY7 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC25.83■■□□□ 1.73
IFT140Q96RY7 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC25.83■■□□□ 1.73
IFT140Q96RY7 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC25.83■■□□□ 1.73
IFT140Q96RY7 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC25.83■■□□□ 1.73
IFT140Q96RY7 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC25.83■■□□□ 1.73
IFT140Q96RY7 AC087045.2-201ENST00000606279 1003 ntBASIC25.83■■□□□ 1.73
IFT140Q96RY7 AC004923.1-202ENST00000642106 209 ntBASIC25.83■■□□□ 1.73
IFT140Q96RY7 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC25.83■■□□□ 1.73
IFT140Q96RY7 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
IFT140Q96RY7 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC25.83■■□□□ 1.72
IFT140Q96RY7 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC25.83■■□□□ 1.72
IFT140Q96RY7 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC25.82■■□□□ 1.72
IFT140Q96RY7 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
IFT140Q96RY7 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC25.82■■□□□ 1.72
IFT140Q96RY7 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC25.82■■□□□ 1.72
IFT140Q96RY7 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
IFT140Q96RY7 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
IFT140Q96RY7 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC25.82■■□□□ 1.72
IFT140Q96RY7 AC005324.6-201ENST00000587972 613 ntBASIC25.82■■□□□ 1.72
IFT140Q96RY7 INO80C-210ENST00000590757 595 ntTSL 2 BASIC25.82■■□□□ 1.72
IFT140Q96RY7 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC25.82■■□□□ 1.72
IFT140Q96RY7 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC25.82■■□□□ 1.72
IFT140Q96RY7 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
IFT140Q96RY7 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
IFT140Q96RY7 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
IFT140Q96RY7 AL390961.4-201ENST00000623958 2535 ntBASIC25.82■■□□□ 1.72
IFT140Q96RY7 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
IFT140Q96RY7 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
IFT140Q96RY7 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC25.82■■□□□ 1.72
IFT140Q96RY7 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
IFT140Q96RY7 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
IFT140Q96RY7 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC25.82■■□□□ 1.72
IFT140Q96RY7 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
IFT140Q96RY7 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC25.82■■□□□ 1.72
IFT140Q96RY7 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC25.81■■□□□ 1.72
IFT140Q96RY7 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC25.81■■□□□ 1.72
IFT140Q96RY7 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC25.81■■□□□ 1.72
IFT140Q96RY7 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC25.81■■□□□ 1.72
IFT140Q96RY7 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC25.81■■□□□ 1.72
IFT140Q96RY7 AC021723.1-201ENST00000486306 515 ntBASIC25.81■■□□□ 1.72
IFT140Q96RY7 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC25.81■■□□□ 1.72
IFT140Q96RY7 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC25.81■■□□□ 1.72
IFT140Q96RY7 AL160314.3-201ENST00000556041 767 ntBASIC25.81■■□□□ 1.72
IFT140Q96RY7 AC092171.5-201ENST00000608012 942 ntBASIC25.81■■□□□ 1.72
IFT140Q96RY7 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC25.81■■□□□ 1.72
IFT140Q96RY7 PCBP2-OT1-201ENST00000634357 590 ntBASIC25.81■■□□□ 1.72
IFT140Q96RY7 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC25.81■■□□□ 1.72
IFT140Q96RY7 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC25.81■■□□□ 1.72
IFT140Q96RY7 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
IFT140Q96RY7 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC25.81■■□□□ 1.72
IFT140Q96RY7 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC25.81■■□□□ 1.72
IFT140Q96RY7 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC25.81■■□□□ 1.72
IFT140Q96RY7 AL157791.1-201ENST00000553667 1699 ntBASIC25.81■■□□□ 1.72
IFT140Q96RY7 AC004899.1-201ENST00000424687 1714 ntBASIC25.81■■□□□ 1.72
IFT140Q96RY7 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
IFT140Q96RY7 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
IFT140Q96RY7 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
IFT140Q96RY7 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
IFT140Q96RY7 GHSR-202ENST00000427970 912 ntBASIC25.8■■□□□ 1.72
IFT140Q96RY7 DNAJB1P1-201ENST00000429417 1024 ntBASIC25.8■■□□□ 1.72
IFT140Q96RY7 AC078991.1-201ENST00000437297 610 ntBASIC25.8■■□□□ 1.72
IFT140Q96RY7 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC25.8■■□□□ 1.72
IFT140Q96RY7 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC25.8■■□□□ 1.72
IFT140Q96RY7 IGLV3-15-201ENST00000518356 244 ntBASIC25.8■■□□□ 1.72
IFT140Q96RY7 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC25.8■■□□□ 1.72
IFT140Q96RY7 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC25.8■■□□□ 1.72
IFT140Q96RY7 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
IFT140Q96RY7 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC25.8■■□□□ 1.72
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms