Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 BAD-207ENST00000544785 525 ntTSL 3 BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 AC011467.4-201ENST00000594891 528 ntBASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 FLJ16779-201ENST00000612722 7638 ntBASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC19.17■□□□□ 0.66
CHMP4CQ96CF2 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 AL136379.1-201ENST00000623471 2642 ntBASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 AC055876.3-201ENST00000431496 288 ntBASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 MTND6P24-201ENST00000440466 518 ntBASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 UGT1A2P-201ENST00000454886 866 ntBASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 AC138649.4-201ENST00000612222 287 ntBASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CHMP4CQ96CF2 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
CHMP4CQ96CF2 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHMP4CQ96CF2 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC19.15■□□□□ 0.66
CHMP4CQ96CF2 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHMP4CQ96CF2 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHMP4CQ96CF2 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CHMP4CQ96CF2 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHMP4CQ96CF2 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CHMP4CQ96CF2 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHMP4CQ96CF2 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHMP4CQ96CF2 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
CHMP4CQ96CF2 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC19.15■□□□□ 0.66
CHMP4CQ96CF2 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC19.15■□□□□ 0.66
CHMP4CQ96CF2 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHMP4CQ96CF2 BCRP1-201ENST00000444246 691 ntBASIC19.15■□□□□ 0.66
CHMP4CQ96CF2 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC19.15■□□□□ 0.66
CHMP4CQ96CF2 AL512356.2-201ENST00000546955 174 ntBASIC19.15■□□□□ 0.66
CHMP4CQ96CF2 SPCS2P1-201ENST00000561636 679 ntBASIC19.15■□□□□ 0.66
CHMP4CQ96CF2 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC19.15■□□□□ 0.66
CHMP4CQ96CF2 AC073389.1-201ENST00000595595 795 ntBASIC19.15■□□□□ 0.66
CHMP4CQ96CF2 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC19.15■□□□□ 0.66
CHMP4CQ96CF2 AC018529.1-201ENST00000613063 361 ntBASIC19.15■□□□□ 0.66
CHMP4CQ96CF2 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
CHMP4CQ96CF2 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CHMP4CQ96CF2 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC19.15■□□□□ 0.66
CHMP4CQ96CF2 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
CHMP4CQ96CF2 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC19.15■□□□□ 0.66
CHMP4CQ96CF2 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CHMP4CQ96CF2 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CHMP4CQ96CF2 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC19.15■□□□□ 0.66
CHMP4CQ96CF2 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CHMP4CQ96CF2 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC19.15■□□□□ 0.66
CHMP4CQ96CF2 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHMP4CQ96CF2 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CHMP4CQ96CF2 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CHMP4CQ96CF2 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
CHMP4CQ96CF2 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
CHMP4CQ96CF2 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
CHMP4CQ96CF2 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC19.14■□□□□ 0.66
CHMP4CQ96CF2 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC19.14■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms