Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 AQP7P3-201ENST00000624547 1041 ntBASIC15.89■□□□□ 0.13
TTC28Q96AY4 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
TTC28Q96AY4 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TTC28Q96AY4 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TTC28Q96AY4 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TTC28Q96AY4 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TTC28Q96AY4 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
TTC28Q96AY4 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
TTC28Q96AY4 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
TTC28Q96AY4 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TTC28Q96AY4 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TTC28Q96AY4 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TTC28Q96AY4 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC15.88■□□□□ 0.13
TTC28Q96AY4 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC15.88■□□□□ 0.13
TTC28Q96AY4 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC15.88■□□□□ 0.13
TTC28Q96AY4 PCDHB17P-201ENST00000539533 2393 ntBASIC15.88■□□□□ 0.13
TTC28Q96AY4 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC15.88■□□□□ 0.13
TTC28Q96AY4 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC15.88■□□□□ 0.13
TTC28Q96AY4 TNFRSF12A-204ENST00000573001 648 ntTSL 3 BASIC15.88■□□□□ 0.13
TTC28Q96AY4 THY1-209ENST00000580275 578 ntTSL 3 BASIC15.88■□□□□ 0.13
TTC28Q96AY4 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC15.88■□□□□ 0.13
TTC28Q96AY4 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
TTC28Q96AY4 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC15.88■□□□□ 0.13
TTC28Q96AY4 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC15.88■□□□□ 0.13
TTC28Q96AY4 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC15.88■□□□□ 0.13
TTC28Q96AY4 AC004554.1-201ENST00000422830 1468 ntBASIC15.88■□□□□ 0.13
TTC28Q96AY4 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
TTC28Q96AY4 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
TTC28Q96AY4 AC138028.4-201ENST00000564984 1845 ntBASIC15.88■□□□□ 0.13
TTC28Q96AY4 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TTC28Q96AY4 AC092068.3-201ENST00000587894 2016 ntBASIC15.88■□□□□ 0.13
TTC28Q96AY4 TNNI2-201ENST00000252898 678 ntAPPRIS P3 TSL 3 BASIC15.88■□□□□ 0.13
TTC28Q96AY4 C18orf21-202ENST00000333234 958 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TTC28Q96AY4 TNNI2-202ENST00000381905 706 ntAPPRIS ALT1 TSL 3 BASIC15.88■□□□□ 0.13
TTC28Q96AY4 TNNI2-203ENST00000381906 745 ntAPPRIS P3 TSL 3 BASIC15.88■□□□□ 0.13
TTC28Q96AY4 TNNI2-204ENST00000381911 743 ntAPPRIS P3 TSL 2 BASIC15.88■□□□□ 0.13
TTC28Q96AY4 HNRNPA1P58-201ENST00000403629 610 ntBASIC15.88■□□□□ 0.13
TTC28Q96AY4 KRT17P4-201ENST00000429445 819 ntBASIC15.88■□□□□ 0.13
TTC28Q96AY4 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC15.88■□□□□ 0.13
TTC28Q96AY4 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC15.88■□□□□ 0.13
TTC28Q96AY4 RNMTL1P1-201ENST00000454103 560 ntBASIC15.88■□□□□ 0.13
TTC28Q96AY4 NDUFA3-214ENST00000485876 963 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TTC28Q96AY4 AL160314.3-201ENST00000556041 767 ntBASIC15.88■□□□□ 0.13
TTC28Q96AY4 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC15.88■□□□□ 0.13
TTC28Q96AY4 AC090164.2-201ENST00000611487 516 ntBASIC15.88■□□□□ 0.13
TTC28Q96AY4 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TTC28Q96AY4 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TTC28Q96AY4 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
TTC28Q96AY4 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
TTC28Q96AY4 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
TTC28Q96AY4 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
TTC28Q96AY4 AL691432.1-201ENST00000596308 1422 ntBASIC15.87■□□□□ 0.13
TTC28Q96AY4 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TTC28Q96AY4 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
TTC28Q96AY4 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
TTC28Q96AY4 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
TTC28Q96AY4 MT1E-202ENST00000330439 729 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
TTC28Q96AY4 AL627231.1-201ENST00000394467 1125 ntBASIC15.87■□□□□ 0.13
TTC28Q96AY4 KLF2P2-201ENST00000416807 1039 ntBASIC15.87■□□□□ 0.13
TTC28Q96AY4 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC15.87■□□□□ 0.13
TTC28Q96AY4 AL132994.2-201ENST00000603120 687 ntBASIC15.87■□□□□ 0.13
TTC28Q96AY4 PEBP1P2-201ENST00000603980 558 ntBASIC15.87■□□□□ 0.13
TTC28Q96AY4 MEG3_2.1-201ENST00000611456 105 ntBASIC15.87■□□□□ 0.13
TTC28Q96AY4 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TTC28Q96AY4 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC15.87■□□□□ 0.13
TTC28Q96AY4 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TTC28Q96AY4 REXO1L1P-202ENST00000608646 1974 ntBASIC15.87■□□□□ 0.13
TTC28Q96AY4 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
TTC28Q96AY4 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
TTC28Q96AY4 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TTC28Q96AY4 AL354751.1-201ENST00000412768 1863 ntBASIC15.87■□□□□ 0.13
TTC28Q96AY4 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TTC28Q96AY4 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
TTC28Q96AY4 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
TTC28Q96AY4 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TTC28Q96AY4 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
TTC28Q96AY4 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
TTC28Q96AY4 AC002472.4-201ENST00000641915 272 ntBASIC15.87■□□□□ 0.13
TTC28Q96AY4 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
TTC28Q96AY4 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
TTC28Q96AY4 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TTC28Q96AY4 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC15.86■□□□□ 0.13
TTC28Q96AY4 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC15.86■□□□□ 0.13
TTC28Q96AY4 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC15.86■□□□□ 0.13
TTC28Q96AY4 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC15.86■□□□□ 0.13
TTC28Q96AY4 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
TTC28Q96AY4 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
TTC28Q96AY4 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
TTC28Q96AY4 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
TTC28Q96AY4 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
TTC28Q96AY4 AL138799.1-201ENST00000448213 1675 ntBASIC15.86■□□□□ 0.13
TTC28Q96AY4 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
TTC28Q96AY4 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
TTC28Q96AY4 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
TTC28Q96AY4 POU5F1P2-201ENST00000521750 823 ntBASIC15.86■□□□□ 0.13
TTC28Q96AY4 AF111169.3-201ENST00000553991 756 ntTSL 5 BASIC15.86■□□□□ 0.13
TTC28Q96AY4 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC15.86■□□□□ 0.13
TTC28Q96AY4 AC005324.6-201ENST00000587972 613 ntBASIC15.86■□□□□ 0.13
TTC28Q96AY4 AL139339.2-201ENST00000608063 657 ntBASIC15.86■□□□□ 0.13
TTC28Q96AY4 AP001002.3-201ENST00000623482 206 ntBASIC15.86■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms