Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC16.29■□□□□ 0.2
SHROOM3Q8TF72 TKT-202ENST00000423516 2075 ntTSL 2 BASIC16.28■□□□□ 0.2
SHROOM3Q8TF72 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHROOM3Q8TF72 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHROOM3Q8TF72 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SHROOM3Q8TF72 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHROOM3Q8TF72 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHROOM3Q8TF72 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
SHROOM3Q8TF72 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHROOM3Q8TF72 AC004987.2-201ENST00000395959 1148 ntBASIC16.28■□□□□ 0.2
SHROOM3Q8TF72 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC16.28■□□□□ 0.2
SHROOM3Q8TF72 NAA50-208ENST00000497255 789 ntTSL 5 BASIC16.28■□□□□ 0.2
SHROOM3Q8TF72 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
SHROOM3Q8TF72 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC16.28■□□□□ 0.2
SHROOM3Q8TF72 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC16.28■□□□□ 0.2
SHROOM3Q8TF72 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC16.28■□□□□ 0.2
SHROOM3Q8TF72 IFT20-216ENST00000588477 774 ntTSL 5 BASIC16.28■□□□□ 0.2
SHROOM3Q8TF72 SPDYE12P-201ENST00000618416 771 ntBASIC16.28■□□□□ 0.2
SHROOM3Q8TF72 AC025048.6-201ENST00000634326 1161 ntBASIC16.28■□□□□ 0.2
SHROOM3Q8TF72 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
SHROOM3Q8TF72 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC16.28■□□□□ 0.2
SHROOM3Q8TF72 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHROOM3Q8TF72 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC16.28■□□□□ 0.2
SHROOM3Q8TF72 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
SHROOM3Q8TF72 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC16.28■□□□□ 0.2
SHROOM3Q8TF72 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
SHROOM3Q8TF72 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
SHROOM3Q8TF72 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SHROOM3Q8TF72 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC16.28■□□□□ 0.2
SHROOM3Q8TF72 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
SHROOM3Q8TF72 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHROOM3Q8TF72 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
SHROOM3Q8TF72 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
SHROOM3Q8TF72 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SHROOM3Q8TF72 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
SHROOM3Q8TF72 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SHROOM3Q8TF72 GRAP-202ENST00000395635 834 ntTSL 2 BASIC16.27■□□□□ 0.2
SHROOM3Q8TF72 TSSK5P-201ENST00000423978 907 ntBASIC16.27■□□□□ 0.2
SHROOM3Q8TF72 UGT1A2P-201ENST00000454886 866 ntBASIC16.27■□□□□ 0.2
SHROOM3Q8TF72 AC125807.1-201ENST00000483097 614 ntBASIC16.27■□□□□ 0.2
SHROOM3Q8TF72 AC097493.3-201ENST00000509725 367 ntBASIC16.27■□□□□ 0.2
SHROOM3Q8TF72 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC16.27■□□□□ 0.2
SHROOM3Q8TF72 LINC01115-203ENST00000606068 577 ntBASIC16.27■□□□□ 0.2
SHROOM3Q8TF72 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC16.27■□□□□ 0.2
SHROOM3Q8TF72 SRP9-204ENST00000619790 377 ntTSL 2 BASIC16.27■□□□□ 0.2
SHROOM3Q8TF72 AC073592.8-201ENST00000624126 511 ntBASIC16.27■□□□□ 0.2
SHROOM3Q8TF72 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SHROOM3Q8TF72 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
SHROOM3Q8TF72 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SHROOM3Q8TF72 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
SHROOM3Q8TF72 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SHROOM3Q8TF72 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC16.27■□□□□ 0.2
SHROOM3Q8TF72 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC16.27■□□□□ 0.2
SHROOM3Q8TF72 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SHROOM3Q8TF72 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SHROOM3Q8TF72 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC16.27■□□□□ 0.2
SHROOM3Q8TF72 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SHROOM3Q8TF72 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
SHROOM3Q8TF72 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
SHROOM3Q8TF72 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SHROOM3Q8TF72 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
SHROOM3Q8TF72 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SHROOM3Q8TF72 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
SHROOM3Q8TF72 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SHROOM3Q8TF72 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
SHROOM3Q8TF72 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC16.27■□□□□ 0.19
SHROOM3Q8TF72 RN7SL692P-201ENST00000464677 288 ntBASIC16.27■□□□□ 0.19
SHROOM3Q8TF72 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
SHROOM3Q8TF72 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC16.27■□□□□ 0.19
SHROOM3Q8TF72 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.19
SHROOM3Q8TF72 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC16.27■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms