Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
CCDC54Q8NEL0 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 CRCP-205ENST00000431089 942 ntTSL 2 BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 MDH2-205ENST00000461263 648 ntTSL 2 BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 CD7-202ENST00000578509 925 ntTSL 3 BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 Z83851.2-201ENST00000609564 659 ntBASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CCDC54Q8NEL0 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 AC073439.1-201ENST00000624121 1774 ntBASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 PRYP6-201ENST00000514804 343 ntBASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 AC024267.1-201ENST00000582320 895 ntBASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 IRF5-214ENST00000613821 595 ntTSL 5 BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
CCDC54Q8NEL0 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms