Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 NABP1-203ENST00000409510 843 ntTSL 5 BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 SLC4A1APP2-201ENST00000424054 1259 ntBASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 CYGB-205ENST00000590175 830 ntTSL 3 BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 AC004706.3-202ENST00000621574 984 ntBASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 CACNA1G-208ENST00000442258 7226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC15.47■□□□□ 0.07
PPP4R4Q6NUP7 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 CICP24-201ENST00000605464 2705 ntBASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 PI4KAP1-204ENST00000612579 1703 ntBASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 AC023908.3-201ENST00000564211 3047 ntBASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 MIR648-201ENST00000385046 94 ntBASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 AP000347.1-202ENST00000435868 847 ntBASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 RNA5SP415-201ENST00000517246 115 ntBASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC15.46■□□□□ 0.07
PPP4R4Q6NUP7 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
PPP4R4Q6NUP7 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.06
PPP4R4Q6NUP7 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
PPP4R4Q6NUP7 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
PPP4R4Q6NUP7 LINC01144-201ENST00000626198 1710 ntBASIC15.46■□□□□ 0.06
PPP4R4Q6NUP7 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PPP4R4Q6NUP7 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC15.45■□□□□ 0.06
PPP4R4Q6NUP7 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PPP4R4Q6NUP7 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PPP4R4Q6NUP7 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC15.45■□□□□ 0.06
PPP4R4Q6NUP7 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms