Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
USP39Q53GS9 AL391256.1-201ENST00000443260 1855 ntBASIC16.29■□□□□ 0.2
USP39Q53GS9 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
USP39Q53GS9 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
USP39Q53GS9 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
USP39Q53GS9 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
USP39Q53GS9 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
USP39Q53GS9 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC16.29■□□□□ 0.2
USP39Q53GS9 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC16.29■□□□□ 0.2
USP39Q53GS9 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
USP39Q53GS9 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
USP39Q53GS9 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
USP39Q53GS9 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
USP39Q53GS9 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
USP39Q53GS9 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
USP39Q53GS9 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
USP39Q53GS9 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC16.29■□□□□ 0.2
USP39Q53GS9 RPL28-204ENST00000431533 590 ntTSL 2 BASIC16.29■□□□□ 0.2
USP39Q53GS9 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
USP39Q53GS9 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
USP39Q53GS9 AC123567.1-201ENST00000548294 1261 ntBASIC16.29■□□□□ 0.2
USP39Q53GS9 RPL28-206ENST00000558752 671 ntTSL 3 BASIC16.29■□□□□ 0.2
USP39Q53GS9 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC16.29■□□□□ 0.2
USP39Q53GS9 AC061975.2-201ENST00000581722 295 ntBASIC16.29■□□□□ 0.2
USP39Q53GS9 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC16.29■□□□□ 0.2
USP39Q53GS9 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
USP39Q53GS9 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
USP39Q53GS9 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
USP39Q53GS9 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.29■□□□□ 0.2
USP39Q53GS9 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
USP39Q53GS9 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
USP39Q53GS9 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
USP39Q53GS9 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
USP39Q53GS9 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
USP39Q53GS9 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
USP39Q53GS9 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
USP39Q53GS9 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC16.29■□□□□ 0.2
USP39Q53GS9 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC16.29■□□□□ 0.2
USP39Q53GS9 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
USP39Q53GS9 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
USP39Q53GS9 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.29■□□□□ 0.2
USP39Q53GS9 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
USP39Q53GS9 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
USP39Q53GS9 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
USP39Q53GS9 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
USP39Q53GS9 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
USP39Q53GS9 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
USP39Q53GS9 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
USP39Q53GS9 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
USP39Q53GS9 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
USP39Q53GS9 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
USP39Q53GS9 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
USP39Q53GS9 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
USP39Q53GS9 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
USP39Q53GS9 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
USP39Q53GS9 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
USP39Q53GS9 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
USP39Q53GS9 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
USP39Q53GS9 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
USP39Q53GS9 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
USP39Q53GS9 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
USP39Q53GS9 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
USP39Q53GS9 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
USP39Q53GS9 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC16.28■□□□□ 0.2
USP39Q53GS9 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
USP39Q53GS9 AC022210.1-201ENST00000449856 793 ntBASIC16.28■□□□□ 0.2
USP39Q53GS9 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
USP39Q53GS9 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC16.28■□□□□ 0.2
USP39Q53GS9 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC16.28■□□□□ 0.2
USP39Q53GS9 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
USP39Q53GS9 AC093726.1-201ENST00000608064 963 ntBASIC16.28■□□□□ 0.2
USP39Q53GS9 AL139011.1-202ENST00000642063 584 ntBASIC16.28■□□□□ 0.2
USP39Q53GS9 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC16.28■□□□□ 0.2
USP39Q53GS9 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC16.28■□□□□ 0.2
USP39Q53GS9 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
USP39Q53GS9 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.28■□□□□ 0.2
USP39Q53GS9 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
USP39Q53GS9 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.28■□□□□ 0.2
USP39Q53GS9 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
USP39Q53GS9 PCDH8P1-201ENST00000428983 2773 ntBASIC16.28■□□□□ 0.2
USP39Q53GS9 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
USP39Q53GS9 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
USP39Q53GS9 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16.28■□□□□ 0.2
USP39Q53GS9 SNX33P1-201ENST00000592116 1762 ntBASIC16.28■□□□□ 0.2
USP39Q53GS9 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
USP39Q53GS9 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC16.28■□□□□ 0.2
USP39Q53GS9 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC16.28■□□□□ 0.2
USP39Q53GS9 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
USP39Q53GS9 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
USP39Q53GS9 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
USP39Q53GS9 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
USP39Q53GS9 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
USP39Q53GS9 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
USP39Q53GS9 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
USP39Q53GS9 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC16.27■□□□□ 0.2
USP39Q53GS9 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
USP39Q53GS9 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
USP39Q53GS9 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC16.27■□□□□ 0.2
USP39Q53GS9 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
USP39Q53GS9 AC234783.1-201ENST00000441761 496 ntBASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms