Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LIMK1P53667 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LIMK1P53667 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LIMK1P53667 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LIMK1P53667 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC15.79■□□□□ 0.12
LIMK1P53667 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC15.79■□□□□ 0.12
LIMK1P53667 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC15.79■□□□□ 0.12
LIMK1P53667 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LIMK1P53667 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC15.79■□□□□ 0.12
LIMK1P53667 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
LIMK1P53667 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LIMK1P53667 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
LIMK1P53667 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
LIMK1P53667 AC092068.3-201ENST00000587894 2016 ntBASIC15.79■□□□□ 0.12
LIMK1P53667 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC15.79■□□□□ 0.12
LIMK1P53667 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
LIMK1P53667 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC15.79■□□□□ 0.12
LIMK1P53667 ZBTB12BP-201ENST00000314232 1122 ntBASIC15.79■□□□□ 0.12
LIMK1P53667 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
LIMK1P53667 CALR4P-201ENST00000431943 946 ntBASIC15.79■□□□□ 0.12
LIMK1P53667 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC15.79■□□□□ 0.12
LIMK1P53667 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC15.79■□□□□ 0.12
LIMK1P53667 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC15.79■□□□□ 0.12
LIMK1P53667 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC15.79■□□□□ 0.12
LIMK1P53667 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
LIMK1P53667 C2orf69P2-201ENST00000562032 1123 ntBASIC15.79■□□□□ 0.12
LIMK1P53667 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC15.79■□□□□ 0.12
LIMK1P53667 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC15.79■□□□□ 0.12
LIMK1P53667 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC15.79■□□□□ 0.12
LIMK1P53667 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC15.79■□□□□ 0.12
LIMK1P53667 MIR6727-201ENST00000620702 65 ntBASIC15.79■□□□□ 0.12
LIMK1P53667 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC15.79■□□□□ 0.12
LIMK1P53667 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC15.79■□□□□ 0.12
LIMK1P53667 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LIMK1P53667 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LIMK1P53667 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC15.79■□□□□ 0.12
LIMK1P53667 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LIMK1P53667 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LIMK1P53667 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
LIMK1P53667 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
LIMK1P53667 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
LIMK1P53667 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LIMK1P53667 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC15.79■□□□□ 0.12
LIMK1P53667 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LIMK1P53667 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
LIMK1P53667 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
LIMK1P53667 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LIMK1P53667 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIMK1P53667 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LIMK1P53667 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC15.78■□□□□ 0.12
LIMK1P53667 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC15.78■□□□□ 0.12
LIMK1P53667 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIMK1P53667 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC15.78■□□□□ 0.12
LIMK1P53667 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIMK1P53667 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LIMK1P53667 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC15.78■□□□□ 0.12
LIMK1P53667 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LIMK1P53667 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIMK1P53667 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC15.78■□□□□ 0.12
LIMK1P53667 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC15.78■□□□□ 0.12
LIMK1P53667 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIMK1P53667 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIMK1P53667 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LIMK1P53667 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
LIMK1P53667 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC15.78■□□□□ 0.12
LIMK1P53667 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIMK1P53667 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIMK1P53667 MPV17-206ENST00000402722 827 ntTSL 3 BASIC15.78■□□□□ 0.12
LIMK1P53667 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIMK1P53667 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC15.78■□□□□ 0.12
LIMK1P53667 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC15.78■□□□□ 0.12
LIMK1P53667 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
LIMK1P53667 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LIMK1P53667 AL139010.1-201ENST00000454878 894 ntBASIC15.78■□□□□ 0.12
LIMK1P53667 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC15.78■□□□□ 0.12
LIMK1P53667 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC15.78■□□□□ 0.12
LIMK1P53667 AC036164.1-201ENST00000570544 333 ntBASIC15.78■□□□□ 0.12
LIMK1P53667 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC15.78■□□□□ 0.12
LIMK1P53667 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
LIMK1P53667 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LIMK1P53667 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LIMK1P53667 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
LIMK1P53667 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
LIMK1P53667 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
LIMK1P53667 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIMK1P53667 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LIMK1P53667 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LIMK1P53667 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LIMK1P53667 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC15.78■□□□□ 0.12
LIMK1P53667 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC15.78■□□□□ 0.12
LIMK1P53667 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIMK1P53667 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIMK1P53667 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIMK1P53667 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIMK1P53667 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
LIMK1P53667 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC15.78■□□□□ 0.12
LIMK1P53667 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC15.78■□□□□ 0.12
LIMK1P53667 FRMD8P1-201ENST00000440433 1524 ntBASIC15.78■□□□□ 0.12
LIMK1P53667 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
LIMK1P53667 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms