Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 MIR4750-201ENST00000584564 56 ntBASIC21.87■■□□□ 1.09
MSH6P52701 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
MSH6P52701 ECM1P1-201ENST00000604092 1279 ntBASIC21.87■■□□□ 1.09
MSH6P52701 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
MSH6P52701 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
MSH6P52701 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
MSH6P52701 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
MSH6P52701 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
MSH6P52701 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
MSH6P52701 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
MSH6P52701 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC21.86■■□□□ 1.09
MSH6P52701 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
MSH6P52701 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
MSH6P52701 CYP2AB1P-202ENST00000454440 1456 ntBASIC21.86■■□□□ 1.09
MSH6P52701 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
MSH6P52701 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
MSH6P52701 AL023775.1-201ENST00000454907 1746 ntBASIC21.86■■□□□ 1.09
MSH6P52701 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
MSH6P52701 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
MSH6P52701 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
MSH6P52701 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC21.86■■□□□ 1.09
MSH6P52701 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC21.86■■□□□ 1.09
MSH6P52701 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
MSH6P52701 NKAIN1P1-201ENST00000435754 582 ntBASIC21.86■■□□□ 1.09
MSH6P52701 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
MSH6P52701 RN7SL11P-201ENST00000471305 293 ntBASIC21.86■■□□□ 1.09
MSH6P52701 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
MSH6P52701 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC21.86■■□□□ 1.09
MSH6P52701 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC21.86■■□□□ 1.09
MSH6P52701 ETV2-208ENST00000621247 941 ntTSL 5 BASIC21.86■■□□□ 1.09
MSH6P52701 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
MSH6P52701 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
MSH6P52701 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
MSH6P52701 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
MSH6P52701 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC21.85■■□□□ 1.09
MSH6P52701 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC21.85■■□□□ 1.09
MSH6P52701 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC21.85■■□□□ 1.09
MSH6P52701 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC21.85■■□□□ 1.09
MSH6P52701 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
MSH6P52701 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
MSH6P52701 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC21.85■■□□□ 1.09
MSH6P52701 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC21.85■■□□□ 1.09
MSH6P52701 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC21.85■■□□□ 1.09
MSH6P52701 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
MSH6P52701 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
MSH6P52701 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
MSH6P52701 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
MSH6P52701 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
MSH6P52701 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC21.85■■□□□ 1.09
MSH6P52701 EEF1DP6-201ENST00000449232 372 ntBASIC21.85■■□□□ 1.09
MSH6P52701 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
MSH6P52701 SERPINA13P-202ENST00000478994 924 ntBASIC21.85■■□□□ 1.09
MSH6P52701 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC21.85■■□□□ 1.09
MSH6P52701 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
MSH6P52701 AC007663.3-201ENST00000609632 465 ntBASIC21.85■■□□□ 1.09
MSH6P52701 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
MSH6P52701 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
MSH6P52701 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
MSH6P52701 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
MSH6P52701 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
MSH6P52701 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
MSH6P52701 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
MSH6P52701 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
MSH6P52701 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC21.84■■□□□ 1.09
MSH6P52701 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
MSH6P52701 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
MSH6P52701 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
MSH6P52701 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
MSH6P52701 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
MSH6P52701 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC21.84■■□□□ 1.09
MSH6P52701 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC21.84■■□□□ 1.09
MSH6P52701 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
MSH6P52701 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
MSH6P52701 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
MSH6P52701 GGT3P-204ENST00000453783 1664 ntBASIC21.84■■□□□ 1.09
MSH6P52701 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
MSH6P52701 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
MSH6P52701 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
MSH6P52701 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC21.84■■□□□ 1.09
MSH6P52701 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
MSH6P52701 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC21.84■■□□□ 1.09
MSH6P52701 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC21.84■■□□□ 1.09
MSH6P52701 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
MSH6P52701 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC21.84■■□□□ 1.09
MSH6P52701 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
MSH6P52701 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC21.83■■□□□ 1.09
MSH6P52701 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC21.83■■□□□ 1.09
MSH6P52701 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
MSH6P52701 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
MSH6P52701 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
MSH6P52701 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
MSH6P52701 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
MSH6P52701 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC21.83■■□□□ 1.09
MSH6P52701 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
MSH6P52701 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
MSH6P52701 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
MSH6P52701 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
MSH6P52701 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC21.83■■□□□ 1.09
MSH6P52701 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC21.83■■□□□ 1.08
MSH6P52701 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC21.83■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms