Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LIG3P49916 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIG3P49916 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIG3P49916 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
LIG3P49916 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC16.96■□□□□ 0.31
LIG3P49916 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC16.96■□□□□ 0.3
LIG3P49916 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.3
LIG3P49916 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.96■□□□□ 0.3
LIG3P49916 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC16.96■□□□□ 0.3
LIG3P49916 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.3
LIG3P49916 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.3
LIG3P49916 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.3
LIG3P49916 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.3
LIG3P49916 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC16.96■□□□□ 0.3
LIG3P49916 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC16.96■□□□□ 0.3
LIG3P49916 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC16.96■□□□□ 0.3
LIG3P49916 AC023157.3-201ENST00000619086 2088 ntBASIC16.95■□□□□ 0.3
LIG3P49916 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC16.95■□□□□ 0.3
LIG3P49916 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC16.95■□□□□ 0.3
LIG3P49916 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIG3P49916 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIG3P49916 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LIG3P49916 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIG3P49916 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
LIG3P49916 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC16.95■□□□□ 0.3
LIG3P49916 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
LIG3P49916 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIG3P49916 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIG3P49916 AC074386.1-202ENST00000463561 864 ntBASIC16.95■□□□□ 0.3
LIG3P49916 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC16.95■□□□□ 0.3
LIG3P49916 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC16.95■□□□□ 0.3
LIG3P49916 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC16.95■□□□□ 0.3
LIG3P49916 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC16.95■□□□□ 0.3
LIG3P49916 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC16.95■□□□□ 0.3
LIG3P49916 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.95■□□□□ 0.3
LIG3P49916 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC16.95■□□□□ 0.3
LIG3P49916 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LIG3P49916 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC16.95■□□□□ 0.3
LIG3P49916 AC079781.5-202ENST00000641784 3743 ntBASIC16.95■□□□□ 0.3
LIG3P49916 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIG3P49916 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIG3P49916 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LIG3P49916 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIG3P49916 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIG3P49916 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIG3P49916 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIG3P49916 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LIG3P49916 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIG3P49916 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
LIG3P49916 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
LIG3P49916 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIG3P49916 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LIG3P49916 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIG3P49916 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LIG3P49916 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LIG3P49916 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC16.94■□□□□ 0.3
LIG3P49916 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIG3P49916 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIG3P49916 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
LIG3P49916 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIG3P49916 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIG3P49916 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
LIG3P49916 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIG3P49916 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LIG3P49916 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
LIG3P49916 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
LIG3P49916 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIG3P49916 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC16.94■□□□□ 0.3
LIG3P49916 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC16.94■□□□□ 0.3
LIG3P49916 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIG3P49916 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.94■□□□□ 0.3
LIG3P49916 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC16.94■□□□□ 0.3
LIG3P49916 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC16.94■□□□□ 0.3
LIG3P49916 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
LIG3P49916 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
LIG3P49916 AC055717.3-201ENST00000622967 595 ntBASIC16.94■□□□□ 0.3
LIG3P49916 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LIG3P49916 RER1-203ENST00000378513 3000 ntTSL 3 BASIC16.94■□□□□ 0.3
LIG3P49916 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC16.94■□□□□ 0.3
LIG3P49916 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LIG3P49916 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIG3P49916 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC16.94■□□□□ 0.3
LIG3P49916 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIG3P49916 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIG3P49916 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIG3P49916 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LIG3P49916 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIG3P49916 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
LIG3P49916 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC16.94■□□□□ 0.3
LIG3P49916 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIG3P49916 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
LIG3P49916 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.93■□□□□ 0.3
LIG3P49916 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
LIG3P49916 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIG3P49916 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIG3P49916 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIG3P49916 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
LIG3P49916 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
LIG3P49916 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
LIG3P49916 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms