Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC18.46■□□□□ 0.55
CTCFP49711 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC18.46■□□□□ 0.55
CTCFP49711 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CTCFP49711 AP000346.4-201ENST00000614827 381 ntBASIC18.46■□□□□ 0.55
CTCFP49711 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
CTCFP49711 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CTCFP49711 OR6D1P-202ENST00000641007 5290 ntBASIC18.46■□□□□ 0.55
CTCFP49711 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CTCFP49711 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CTCFP49711 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CTCFP49711 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CTCFP49711 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CTCFP49711 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CTCFP49711 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.54
CTCFP49711 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
CTCFP49711 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
CTCFP49711 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
CTCFP49711 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CTCFP49711 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC18.45■□□□□ 0.54
CTCFP49711 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
CTCFP49711 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CTCFP49711 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
CTCFP49711 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC18.45■□□□□ 0.54
CTCFP49711 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CTCFP49711 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC18.45■□□□□ 0.54
CTCFP49711 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CTCFP49711 AL627389.1-201ENST00000413508 1182 ntBASIC18.45■□□□□ 0.54
CTCFP49711 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC18.45■□□□□ 0.54
CTCFP49711 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC18.45■□□□□ 0.54
CTCFP49711 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC18.45■□□□□ 0.54
CTCFP49711 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC18.45■□□□□ 0.54
CTCFP49711 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC18.45■□□□□ 0.54
CTCFP49711 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC18.45■□□□□ 0.54
CTCFP49711 AC025279.2-201ENST00000569730 653 ntBASIC18.45■□□□□ 0.54
CTCFP49711 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC18.45■□□□□ 0.54
CTCFP49711 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC18.45■□□□□ 0.54
CTCFP49711 AC138951.2-201ENST00000623455 1161 ntBASIC18.45■□□□□ 0.54
CTCFP49711 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
CTCFP49711 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC18.45■□□□□ 0.54
CTCFP49711 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC18.45■□□□□ 0.54
CTCFP49711 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CTCFP49711 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CTCFP49711 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC18.45■□□□□ 0.54
CTCFP49711 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CTCFP49711 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CTCFP49711 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CTCFP49711 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
CTCFP49711 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CTCFP49711 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CTCFP49711 AC046158.3-201ENST00000624947 2558 ntBASIC18.44■□□□□ 0.54
CTCFP49711 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CTCFP49711 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CTCFP49711 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CTCFP49711 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC18.44■□□□□ 0.54
CTCFP49711 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CTCFP49711 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CTCFP49711 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
CTCFP49711 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CTCFP49711 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CTCFP49711 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC18.44■□□□□ 0.54
CTCFP49711 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
CTCFP49711 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC18.44■□□□□ 0.54
CTCFP49711 DPM2-202ENST00000373110 738 ntTSL 2 BASIC18.44■□□□□ 0.54
CTCFP49711 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC18.44■□□□□ 0.54
CTCFP49711 AL008707.1-201ENST00000422498 534 ntBASIC18.44■□□□□ 0.54
CTCFP49711 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC18.44■□□□□ 0.54
CTCFP49711 HIST3H2BA-201ENST00000436555 524 ntBASIC18.44■□□□□ 0.54
CTCFP49711 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC18.44■□□□□ 0.54
CTCFP49711 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CTCFP49711 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC18.44■□□□□ 0.54
CTCFP49711 DIO1-215ENST00000610607 796 ntTSL 5 BASIC18.44■□□□□ 0.54
CTCFP49711 AP001527.2-201ENST00000614441 631 ntBASIC18.44■□□□□ 0.54
CTCFP49711 COX6A1P2-201ENST00000620597 330 ntBASIC18.44■□□□□ 0.54
CTCFP49711 AC005252.2-201ENST00000624630 1141 ntBASIC18.44■□□□□ 0.54
CTCFP49711 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CTCFP49711 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC18.44■□□□□ 0.54
CTCFP49711 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC18.44■□□□□ 0.54
CTCFP49711 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC18.44■□□□□ 0.54
CTCFP49711 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CTCFP49711 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18.44■□□□□ 0.54
CTCFP49711 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
CTCFP49711 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
CTCFP49711 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
CTCFP49711 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CTCFP49711 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CTCFP49711 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC18.44■□□□□ 0.54
CTCFP49711 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CTCFP49711 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CTCFP49711 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CTCFP49711 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC18.44■□□□□ 0.54
CTCFP49711 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CTCFP49711 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
CTCFP49711 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
CTCFP49711 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC18.43■□□□□ 0.54
CTCFP49711 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.43■□□□□ 0.54
CTCFP49711 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CTCFP49711 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CTCFP49711 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CTCFP49711 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC18.43■□□□□ 0.54
CTCFP49711 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms