Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC15.16■□□□□ 0.02
RFX3P48380 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC15.16■□□□□ 0.02
RFX3P48380 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFX3P48380 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFX3P48380 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RFX3P48380 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC15.16■□□□□ 0.02
RFX3P48380 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
RFX3P48380 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX3P48380 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
RFX3P48380 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
RFX3P48380 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX3P48380 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX3P48380 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
RFX3P48380 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RFX3P48380 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RFX3P48380 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
RFX3P48380 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX3P48380 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC15.15■□□□□ 0.02
RFX3P48380 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RFX3P48380 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX3P48380 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC15.15■□□□□ 0.02
RFX3P48380 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX3P48380 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX3P48380 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX3P48380 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX3P48380 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC15.15■□□□□ 0.02
RFX3P48380 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
RFX3P48380 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RFX3P48380 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RFX3P48380 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RFX3P48380 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RFX3P48380 MYB-201ENST00000316528 3571 ntTSL 5 BASIC15.15■□□□□ 0.02
RFX3P48380 MYB-241ENST00000616088 3573 ntTSL 5 BASIC15.15■□□□□ 0.02
RFX3P48380 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX3P48380 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX3P48380 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX3P48380 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX3P48380 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
RFX3P48380 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC15.15■□□□□ 0.02
RFX3P48380 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC15.15■□□□□ 0.02
RFX3P48380 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RFX3P48380 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC15.15■□□□□ 0.02
RFX3P48380 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC15.15■□□□□ 0.02
RFX3P48380 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
RFX3P48380 IGHV3-62-201ENST00000520057 340 ntBASIC15.15■□□□□ 0.02
RFX3P48380 AL138918.1-201ENST00000568306 659 ntBASIC15.15■□□□□ 0.02
RFX3P48380 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX3P48380 AC005829.1-201ENST00000570002 483 ntBASIC15.15■□□□□ 0.02
RFX3P48380 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX3P48380 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC15.15■□□□□ 0.02
RFX3P48380 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC15.15■□□□□ 0.02
RFX3P48380 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
RFX3P48380 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX3P48380 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX3P48380 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RFX3P48380 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC15.15■□□□□ 0.02
RFX3P48380 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RFX3P48380 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC15.15■□□□□ 0.02
RFX3P48380 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC15.15■□□□□ 0.02
RFX3P48380 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RFX3P48380 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX3P48380 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
RFX3P48380 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RFX3P48380 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RFX3P48380 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX3P48380 RELA-227ENST00000615805 2236 ntTSL 5 BASIC15.15■□□□□ 0.02
RFX3P48380 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX3P48380 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFX3P48380 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC15.14■□□□□ 0.01
RFX3P48380 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFX3P48380 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RFX3P48380 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFX3P48380 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFX3P48380 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFX3P48380 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFX3P48380 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFX3P48380 BLK-205ENST00000529894 2017 ntTSL 5 BASIC15.14■□□□□ 0.01
RFX3P48380 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFX3P48380 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC15.14■□□□□ 0.01
RFX3P48380 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFX3P48380 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFX3P48380 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
RFX3P48380 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC15.14■□□□□ 0.01
RFX3P48380 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC15.14■□□□□ 0.01
RFX3P48380 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RFX3P48380 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFX3P48380 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RFX3P48380 COX10-202ENST00000429152 875 ntTSL 2 BASIC15.14■□□□□ 0.01
RFX3P48380 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC15.14■□□□□ 0.01
RFX3P48380 AC093724.1-201ENST00000448659 1027 ntBASIC15.14■□□□□ 0.01
RFX3P48380 FAM86C2P-203ENST00000528684 1004 ntBASIC15.14■□□□□ 0.01
RFX3P48380 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC15.14■□□□□ 0.01
RFX3P48380 CALM1-205ENST00000553542 877 ntTSL 5 BASIC15.14■□□□□ 0.01
RFX3P48380 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC15.14■□□□□ 0.01
RFX3P48380 MIR4469-201ENST00000583919 79 ntBASIC15.14■□□□□ 0.01
RFX3P48380 AC026120.1-201ENST00000611536 926 ntBASIC15.14■□□□□ 0.01
RFX3P48380 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC15.14■□□□□ 0.01
RFX3P48380 CITED2-204ENST00000618718 901 ntTSL 2 BASIC15.14■□□□□ 0.01
RFX3P48380 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC15.14■□□□□ 0.01
RFX3P48380 AC010491.1-201ENST00000563101 2797 ntBASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms