Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CXCL12P48061 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CXCL12P48061 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CXCL12P48061 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CXCL12P48061 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CXCL12P48061 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CXCL12P48061 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
CXCL12P48061 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CXCL12P48061 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC15.79■□□□□ 0.12
CXCL12P48061 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CXCL12P48061 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC15.79■□□□□ 0.12
CXCL12P48061 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
CXCL12P48061 GUK1-206ENST00000366723 845 ntTSL 5 BASIC15.79■□□□□ 0.12
CXCL12P48061 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
CXCL12P48061 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CXCL12P48061 PGGT1BP2-201ENST00000398621 1028 ntBASIC15.79■□□□□ 0.12
CXCL12P48061 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC15.79■□□□□ 0.12
CXCL12P48061 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CXCL12P48061 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC15.79■□□□□ 0.12
CXCL12P48061 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CXCL12P48061 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC15.79■□□□□ 0.12
CXCL12P48061 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC15.79■□□□□ 0.12
CXCL12P48061 MIR4741-201ENST00000579822 90 ntBASIC15.79■□□□□ 0.12
CXCL12P48061 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC15.79■□□□□ 0.12
CXCL12P48061 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CXCL12P48061 AC132938.4-201ENST00000623835 848 ntBASIC15.79■□□□□ 0.12
CXCL12P48061 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CXCL12P48061 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC15.79■□□□□ 0.12
CXCL12P48061 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CXCL12P48061 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CXCL12P48061 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CXCL12P48061 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC15.79■□□□□ 0.12
CXCL12P48061 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
CXCL12P48061 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CXCL12P48061 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC15.79■□□□□ 0.12
CXCL12P48061 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CXCL12P48061 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CXCL12P48061 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.79■□□□□ 0.12
CXCL12P48061 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC15.79■□□□□ 0.12
CXCL12P48061 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC15.79■□□□□ 0.12
CXCL12P48061 AC018470.1-201ENST00000624790 3129 ntBASIC15.79■□□□□ 0.12
CXCL12P48061 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
CXCL12P48061 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CXCL12P48061 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CXCL12P48061 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CXCL12P48061 AC138028.6-201ENST00000616106 1482 ntBASIC15.78■□□□□ 0.12
CXCL12P48061 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
CXCL12P48061 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC15.78■□□□□ 0.12
CXCL12P48061 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
CXCL12P48061 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CXCL12P48061 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CXCL12P48061 CROCCP1-201ENST00000426910 5675 ntBASIC15.78■□□□□ 0.12
CXCL12P48061 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
CXCL12P48061 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CXCL12P48061 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CXCL12P48061 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CXCL12P48061 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC15.78■□□□□ 0.12
CXCL12P48061 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
CXCL12P48061 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC15.78■□□□□ 0.12
CXCL12P48061 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC15.78■□□□□ 0.12
CXCL12P48061 AC004898.1-201ENST00000451057 766 ntBASIC15.78■□□□□ 0.12
CXCL12P48061 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC15.78■□□□□ 0.12
CXCL12P48061 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
CXCL12P48061 SCARNA20.5-201ENST00000516991 142 ntBASIC15.78■□□□□ 0.12
CXCL12P48061 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC15.78■□□□□ 0.12
CXCL12P48061 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC15.78■□□□□ 0.12
CXCL12P48061 AC079328.1-201ENST00000560358 952 ntBASIC15.78■□□□□ 0.12
CXCL12P48061 HNRNPA1P48-202ENST00000565308 961 ntBASIC15.78■□□□□ 0.12
CXCL12P48061 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC15.78■□□□□ 0.12
CXCL12P48061 NAT9-222ENST00000583476 583 ntTSL 3 BASIC15.78■□□□□ 0.12
CXCL12P48061 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC15.78■□□□□ 0.12
CXCL12P48061 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
CXCL12P48061 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CXCL12P48061 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC15.78■□□□□ 0.12
CXCL12P48061 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CXCL12P48061 AP005019.2-201ENST00000615104 511 ntBASIC15.78■□□□□ 0.12
CXCL12P48061 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC15.78■□□□□ 0.12
CXCL12P48061 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CXCL12P48061 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CXCL12P48061 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC15.78■□□□□ 0.12
CXCL12P48061 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CXCL12P48061 REXO1L1P-202ENST00000608646 1974 ntBASIC15.78■□□□□ 0.12
CXCL12P48061 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CXCL12P48061 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CXCL12P48061 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC15.78■□□□□ 0.12
CXCL12P48061 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC15.78■□□□□ 0.12
CXCL12P48061 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
CXCL12P48061 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CXCL12P48061 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CXCL12P48061 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC15.77■□□□□ 0.12
CXCL12P48061 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CXCL12P48061 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
CXCL12P48061 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
CXCL12P48061 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CXCL12P48061 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CXCL12P48061 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CXCL12P48061 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CXCL12P48061 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
CXCL12P48061 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
CXCL12P48061 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms