Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC12.43□□□□□ -0.42
HOXD3P31249 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HOXD3P31249 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
HOXD3P31249 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
HOXD3P31249 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC12.43□□□□□ -0.42
HOXD3P31249 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC12.42□□□□□ -0.42
HOXD3P31249 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HOXD3P31249 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC12.42□□□□□ -0.42
HOXD3P31249 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
HOXD3P31249 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC12.42□□□□□ -0.42
HOXD3P31249 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC12.42□□□□□ -0.42
HOXD3P31249 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HOXD3P31249 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC12.42□□□□□ -0.42
HOXD3P31249 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC12.42□□□□□ -0.42
HOXD3P31249 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC12.42□□□□□ -0.42
HOXD3P31249 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HOXD3P31249 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC12.42□□□□□ -0.42
HOXD3P31249 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC12.42□□□□□ -0.42
HOXD3P31249 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HOXD3P31249 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HOXD3P31249 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HOXD3P31249 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HOXD3P31249 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HOXD3P31249 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
HOXD3P31249 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HOXD3P31249 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
HOXD3P31249 RPS19-201ENST00000221975 500 ntTSL 3 BASIC12.42□□□□□ -0.42
HOXD3P31249 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HOXD3P31249 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HOXD3P31249 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HOXD3P31249 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HOXD3P31249 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HOXD3P31249 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
HOXD3P31249 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC12.42□□□□□ -0.42
HOXD3P31249 AC245100.5-201ENST00000452108 331 ntBASIC12.42□□□□□ -0.42
HOXD3P31249 AL139010.1-201ENST00000454878 894 ntBASIC12.42□□□□□ -0.42
HOXD3P31249 NAA50-208ENST00000497255 789 ntTSL 5 BASIC12.42□□□□□ -0.42
HOXD3P31249 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HOXD3P31249 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC12.42□□□□□ -0.42
HOXD3P31249 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC12.42□□□□□ -0.42
HOXD3P31249 CR383656.12-201ENST00000549567 513 ntBASIC12.42□□□□□ -0.42
HOXD3P31249 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC12.42□□□□□ -0.42
HOXD3P31249 AL132655.2-201ENST00000596276 594 ntBASIC12.42□□□□□ -0.42
HOXD3P31249 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC12.42□□□□□ -0.42
HOXD3P31249 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC12.42□□□□□ -0.42
HOXD3P31249 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC12.42□□□□□ -0.42
HOXD3P31249 RN7SL828P-201ENST00000607615 303 ntBASIC12.42□□□□□ -0.42
HOXD3P31249 AC008738.7-201ENST00000609744 511 ntBASIC12.42□□□□□ -0.42
HOXD3P31249 TEX28P1-201ENST00000613479 1221 ntBASIC12.42□□□□□ -0.42
HOXD3P31249 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC12.42□□□□□ -0.42
HOXD3P31249 TEX28P2-201ENST00000617764 1221 ntBASIC12.42□□□□□ -0.42
HOXD3P31249 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
HOXD3P31249 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
HOXD3P31249 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC12.42□□□□□ -0.42
HOXD3P31249 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC12.42□□□□□ -0.42
HOXD3P31249 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC12.42□□□□□ -0.42
HOXD3P31249 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
HOXD3P31249 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
HOXD3P31249 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HOXD3P31249 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HOXD3P31249 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HOXD3P31249 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HOXD3P31249 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC12.42□□□□□ -0.42
HOXD3P31249 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HOXD3P31249 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC12.42□□□□□ -0.42
HOXD3P31249 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
HOXD3P31249 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC12.42□□□□□ -0.42
HOXD3P31249 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC12.42□□□□□ -0.42
HOXD3P31249 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
HOXD3P31249 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HOXD3P31249 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HOXD3P31249 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
HOXD3P31249 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC12.41□□□□□ -0.42
HOXD3P31249 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
HOXD3P31249 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC12.41□□□□□ -0.42
HOXD3P31249 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HOXD3P31249 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC12.41□□□□□ -0.42
HOXD3P31249 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC12.41□□□□□ -0.42
HOXD3P31249 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXD3P31249 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXD3P31249 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXD3P31249 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
HOXD3P31249 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC12.41□□□□□ -0.42
HOXD3P31249 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXD3P31249 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
HOXD3P31249 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXD3P31249 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HOXD3P31249 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
HOXD3P31249 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HOXD3P31249 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXD3P31249 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXD3P31249 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXD3P31249 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXD3P31249 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HOXD3P31249 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
HOXD3P31249 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXD3P31249 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
HOXD3P31249 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC12.41□□□□□ -0.42
HOXD3P31249 PTPA-220ENST00000436883 532 ntTSL 4 BASIC12.41□□□□□ -0.42
HOXD3P31249 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC12.41□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms