Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL4A5P29400 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL4A5P29400 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
COL4A5P29400 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL4A5P29400 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC18.82■□□□□ 0.6
COL4A5P29400 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL4A5P29400 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL4A5P29400 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC18.82■□□□□ 0.6
COL4A5P29400 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC18.82■□□□□ 0.6
COL4A5P29400 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
COL4A5P29400 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
COL4A5P29400 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC18.82■□□□□ 0.6
COL4A5P29400 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC18.82■□□□□ 0.6
COL4A5P29400 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC18.82■□□□□ 0.6
COL4A5P29400 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC18.82■□□□□ 0.6
COL4A5P29400 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
COL4A5P29400 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC18.82■□□□□ 0.6
COL4A5P29400 AF254983.2-201ENST00000612331 135 ntBASIC18.82■□□□□ 0.6
COL4A5P29400 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
COL4A5P29400 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL4A5P29400 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC18.82■□□□□ 0.6
COL4A5P29400 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
COL4A5P29400 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
COL4A5P29400 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A5P29400 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A5P29400 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A5P29400 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
COL4A5P29400 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A5P29400 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
COL4A5P29400 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.81■□□□□ 0.6
COL4A5P29400 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A5P29400 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A5P29400 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A5P29400 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A5P29400 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A5P29400 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A5P29400 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A5P29400 AC079178.1-201ENST00000420915 656 ntBASIC18.81■□□□□ 0.6
COL4A5P29400 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC18.81■□□□□ 0.6
COL4A5P29400 AC253536.4-201ENST00000440539 267 ntBASIC18.81■□□□□ 0.6
COL4A5P29400 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC18.81■□□□□ 0.6
COL4A5P29400 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC18.81■□□□□ 0.6
COL4A5P29400 AC022217.1-201ENST00000521069 738 ntBASIC18.81■□□□□ 0.6
COL4A5P29400 RN7SL48P-201ENST00000579283 293 ntBASIC18.81■□□□□ 0.6
COL4A5P29400 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC18.81■□□□□ 0.6
COL4A5P29400 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A5P29400 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
COL4A5P29400 AC022188.1-201ENST00000620960 1664 ntBASIC18.81■□□□□ 0.6
COL4A5P29400 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A5P29400 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
COL4A5P29400 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A5P29400 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC18.81■□□□□ 0.6
COL4A5P29400 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC18.8■□□□□ 0.6
COL4A5P29400 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL4A5P29400 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL4A5P29400 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL4A5P29400 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL4A5P29400 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL4A5P29400 SNX21-203ENST00000372541 771 ntTSL 2 BASIC18.8■□□□□ 0.6
COL4A5P29400 HLA-DQB2-229ENST00000411527 1059 ntBASIC18.8■□□□□ 0.6
COL4A5P29400 ACTG1P2-201ENST00000415776 1125 ntBASIC18.8■□□□□ 0.6
COL4A5P29400 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC18.8■□□□□ 0.6
COL4A5P29400 ACTG1P11-201ENST00000425411 1125 ntBASIC18.8■□□□□ 0.6
COL4A5P29400 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC18.8■□□□□ 0.6
COL4A5P29400 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
COL4A5P29400 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL4A5P29400 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
COL4A5P29400 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL4A5P29400 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
COL4A5P29400 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL4A5P29400 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
COL4A5P29400 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL4A5P29400 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL4A5P29400 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC18.79■□□□□ 0.6
COL4A5P29400 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC18.79■□□□□ 0.6
COL4A5P29400 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A5P29400 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
COL4A5P29400 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A5P29400 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A5P29400 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC18.79■□□□□ 0.6
COL4A5P29400 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A5P29400 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
COL4A5P29400 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC18.79■□□□□ 0.6
COL4A5P29400 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A5P29400 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC18.79■□□□□ 0.6
COL4A5P29400 RN7SL720P-201ENST00000488178 304 ntBASIC18.79■□□□□ 0.6
COL4A5P29400 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC18.79■□□□□ 0.6
COL4A5P29400 AC245884.6-201ENST00000515672 1067 ntBASIC18.79■□□□□ 0.6
COL4A5P29400 EHF-205ENST00000527935 557 ntTSL 2 BASIC18.79■□□□□ 0.6
COL4A5P29400 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC18.79■□□□□ 0.6
COL4A5P29400 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
COL4A5P29400 AL133499.1-201ENST00000596207 608 ntBASIC18.79■□□□□ 0.6
COL4A5P29400 AL645939.5-201ENST00000606834 243 ntBASIC18.79■□□□□ 0.6
COL4A5P29400 GPR39-203ENST00000622084 900 ntTSL 5 BASIC18.79■□□□□ 0.6
COL4A5P29400 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
COL4A5P29400 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A5P29400 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.79■□□□□ 0.6
COL4A5P29400 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A5P29400 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A5P29400 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 71.1 ms