Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
HOXC4P09017 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HOXC4P09017 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC15.53■□□□□ 0.08
HOXC4P09017 CDC14C-201ENST00000428251 1719 ntBASIC15.53■□□□□ 0.08
HOXC4P09017 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
HOXC4P09017 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HOXC4P09017 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
HOXC4P09017 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC15.53■□□□□ 0.08
HOXC4P09017 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
HOXC4P09017 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC15.53■□□□□ 0.08
HOXC4P09017 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
HOXC4P09017 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HOXC4P09017 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
HOXC4P09017 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HOXC4P09017 AL391005.1-201ENST00000623953 2435 ntBASIC15.53■□□□□ 0.08
HOXC4P09017 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC15.53■□□□□ 0.08
HOXC4P09017 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
HOXC4P09017 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
HOXC4P09017 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC15.53■□□□□ 0.08
HOXC4P09017 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
HOXC4P09017 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC15.52■□□□□ 0.08
HOXC4P09017 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC15.52■□□□□ 0.08
HOXC4P09017 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HOXC4P09017 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HOXC4P09017 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC15.52■□□□□ 0.08
HOXC4P09017 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
HOXC4P09017 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HOXC4P09017 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC15.52■□□□□ 0.08
HOXC4P09017 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
HOXC4P09017 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC15.52■□□□□ 0.08
HOXC4P09017 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
HOXC4P09017 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
HOXC4P09017 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
HOXC4P09017 AL133267.1-201ENST00000398220 340 ntBASIC15.52■□□□□ 0.08
HOXC4P09017 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
HOXC4P09017 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC15.52■□□□□ 0.08
HOXC4P09017 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC15.52■□□□□ 0.08
HOXC4P09017 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC15.52■□□□□ 0.08
HOXC4P09017 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC15.52■□□□□ 0.08
HOXC4P09017 GIMAP3P-201ENST00000495150 836 ntBASIC15.52■□□□□ 0.08
HOXC4P09017 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
HOXC4P09017 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC15.52■□□□□ 0.08
HOXC4P09017 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
HOXC4P09017 AC106886.1-201ENST00000568660 600 ntBASIC15.52■□□□□ 0.08
HOXC4P09017 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC15.52■□□□□ 0.08
HOXC4P09017 IGHV3-72-202ENST00000621503 303 ntBASIC15.52■□□□□ 0.08
HOXC4P09017 AL033527.5-201ENST00000641382 801 ntBASIC15.52■□□□□ 0.08
HOXC4P09017 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC15.52■□□□□ 0.07
HOXC4P09017 AC092364.2-201ENST00000596710 2692 ntBASIC15.52■□□□□ 0.07
HOXC4P09017 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
HOXC4P09017 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
HOXC4P09017 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
HOXC4P09017 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
HOXC4P09017 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC15.52■□□□□ 0.07
HOXC4P09017 AMT-232ENST00000636199 1546 ntTSL 5 BASIC15.52■□□□□ 0.07
HOXC4P09017 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
HOXC4P09017 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC15.52■□□□□ 0.07
HOXC4P09017 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
HOXC4P09017 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.07
HOXC4P09017 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.07
HOXC4P09017 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
HOXC4P09017 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HOXC4P09017 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC15.51■□□□□ 0.07
HOXC4P09017 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HOXC4P09017 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
HOXC4P09017 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC15.51■□□□□ 0.07
HOXC4P09017 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HOXC4P09017 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
HOXC4P09017 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
HOXC4P09017 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
HOXC4P09017 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
HOXC4P09017 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
HOXC4P09017 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HOXC4P09017 GALT-202ENST00000450095 1280 ntTSL 2 BASIC15.51■□□□□ 0.07
HOXC4P09017 RN7SL837P-201ENST00000463010 287 ntBASIC15.51■□□□□ 0.07
HOXC4P09017 LINC02447-202ENST00000501888 2146 ntBASIC15.51■□□□□ 0.07
HOXC4P09017 ENPP7P5-201ENST00000541031 1031 ntBASIC15.51■□□□□ 0.07
HOXC4P09017 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC15.51■□□□□ 0.07
HOXC4P09017 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC15.51■□□□□ 0.07
HOXC4P09017 AC133539.2-201ENST00000604757 467 ntBASIC15.51■□□□□ 0.07
HOXC4P09017 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HOXC4P09017 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
HOXC4P09017 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
HOXC4P09017 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
HOXC4P09017 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
HOXC4P09017 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
HOXC4P09017 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC15.51■□□□□ 0.07
HOXC4P09017 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
HOXC4P09017 AC018892.3-201ENST00000623986 2499 ntBASIC15.51■□□□□ 0.07
HOXC4P09017 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC15.51■□□□□ 0.07
HOXC4P09017 TK1-203ENST00000588734 1681 ntTSL 2 BASIC15.51■□□□□ 0.07
HOXC4P09017 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC15.5■□□□□ 0.07
HOXC4P09017 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
HOXC4P09017 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HOXC4P09017 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
HOXC4P09017 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
HOXC4P09017 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC15.5■□□□□ 0.07
HOXC4P09017 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
HOXC4P09017 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
HOXC4P09017 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms