Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
COL1A1P02452 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
COL1A1P02452 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL1A1P02452 KRT8P22-201ENST00000562317 1415 ntBASIC19.04■□□□□ 0.64
COL1A1P02452 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
COL1A1P02452 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
COL1A1P02452 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC19.04■□□□□ 0.64
COL1A1P02452 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL1A1P02452 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
COL1A1P02452 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC19.04■□□□□ 0.64
COL1A1P02452 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL1A1P02452 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL1A1P02452 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
COL1A1P02452 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL1A1P02452 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL1A1P02452 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL1A1P02452 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL1A1P02452 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL1A1P02452 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC19.03■□□□□ 0.64
COL1A1P02452 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL1A1P02452 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL1A1P02452 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL1A1P02452 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL1A1P02452 APOA1-205ENST00000375329 927 ntTSL 2 BASIC19.03■□□□□ 0.64
COL1A1P02452 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL1A1P02452 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
COL1A1P02452 AC099336.1-201ENST00000417053 1171 ntBASIC19.03■□□□□ 0.64
COL1A1P02452 ACTG1P3-201ENST00000431775 1114 ntBASIC19.03■□□□□ 0.64
COL1A1P02452 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC19.03■□□□□ 0.64
COL1A1P02452 FO681548.1-201ENST00000455617 1132 ntBASIC19.03■□□□□ 0.64
COL1A1P02452 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC19.03■□□□□ 0.64
COL1A1P02452 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL1A1P02452 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC19.03■□□□□ 0.64
COL1A1P02452 AL583810.1-201ENST00000553344 1045 ntBASIC19.03■□□□□ 0.64
COL1A1P02452 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC19.03■□□□□ 0.64
COL1A1P02452 AC107373.2-201ENST00000607735 490 ntBASIC19.03■□□□□ 0.64
COL1A1P02452 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC19.03■□□□□ 0.64
COL1A1P02452 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL1A1P02452 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL1A1P02452 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
COL1A1P02452 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.03■□□□□ 0.64
COL1A1P02452 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC19.03■□□□□ 0.64
COL1A1P02452 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL1A1P02452 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC19.03■□□□□ 0.64
COL1A1P02452 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL1A1P02452 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL1A1P02452 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC19.03■□□□□ 0.64
COL1A1P02452 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL1A1P02452 KRT8P44-201ENST00000441609 1350 ntBASIC19.03■□□□□ 0.64
COL1A1P02452 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL1A1P02452 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC19.03■□□□□ 0.64
COL1A1P02452 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL1A1P02452 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC19.03■□□□□ 0.64
COL1A1P02452 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
COL1A1P02452 AC005229.1-201ENST00000392885 409 ntBASIC19.03■□□□□ 0.64
COL1A1P02452 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL1A1P02452 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL1A1P02452 MIR1908-201ENST00000410394 80 ntBASIC19.03■□□□□ 0.64
COL1A1P02452 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC19.03■□□□□ 0.64
COL1A1P02452 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
COL1A1P02452 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL1A1P02452 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC19.03■□□□□ 0.64
COL1A1P02452 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL1A1P02452 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC19.03■□□□□ 0.64
COL1A1P02452 AC133539.2-201ENST00000604757 467 ntBASIC19.03■□□□□ 0.64
COL1A1P02452 MIR6787-201ENST00000616675 61 ntBASIC19.03■□□□□ 0.64
COL1A1P02452 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL1A1P02452 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC19.02■□□□□ 0.64
COL1A1P02452 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC19.02■□□□□ 0.64
COL1A1P02452 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL1A1P02452 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL1A1P02452 CES3-203ENST00000543856 3178 ntTSL 2 BASIC19.02■□□□□ 0.64
COL1A1P02452 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.02■□□□□ 0.64
COL1A1P02452 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
COL1A1P02452 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL1A1P02452 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL1A1P02452 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC19.02■□□□□ 0.64
COL1A1P02452 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL1A1P02452 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL1A1P02452 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL1A1P02452 AL603832.2-201ENST00000566195 2125 ntBASIC19.02■□□□□ 0.64
COL1A1P02452 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC19.02■□□□□ 0.63
COL1A1P02452 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL1A1P02452 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL1A1P02452 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL1A1P02452 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL1A1P02452 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC19.02■□□□□ 0.63
COL1A1P02452 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC19.02■□□□□ 0.63
COL1A1P02452 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC19.02■□□□□ 0.63
COL1A1P02452 SLC25A47P1-201ENST00000531577 414 ntBASIC19.02■□□□□ 0.63
COL1A1P02452 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC19.02■□□□□ 0.63
COL1A1P02452 MIR4538-201ENST00000581377 78 ntBASIC19.02■□□□□ 0.63
COL1A1P02452 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC19.02■□□□□ 0.63
COL1A1P02452 MIR6869-201ENST00000619434 62 ntBASIC19.02■□□□□ 0.63
COL1A1P02452 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL1A1P02452 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL1A1P02452 CYP2AB1P-202ENST00000454440 1456 ntBASIC19.02■□□□□ 0.63
COL1A1P02452 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL1A1P02452 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL1A1P02452 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms