Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 TSPY5P-201ENST00000426936 936 ntBASIC12.14□□□□□ -0.47
HLA-DQA1P01909 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 AC112693.3-201ENST00000624819 1983 ntBASIC12.14□□□□□ -0.47
HLA-DQA1P01909 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC12.14□□□□□ -0.47
HLA-DQA1P01909 AC006504.5-208ENST00000588784 2401 ntBASIC12.13□□□□□ -0.47
HLA-DQA1P01909 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 AC073508.3-201ENST00000619697 1419 ntBASIC12.13□□□□□ -0.47
HLA-DQA1P01909 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 AC148477.4-201ENST00000613430 1793 ntBASIC12.13□□□□□ -0.47
HLA-DQA1P01909 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 IGHGP-201ENST00000390555 1178 ntBASIC12.13□□□□□ -0.47
HLA-DQA1P01909 FAM220CP-201ENST00000395253 831 ntBASIC12.13□□□□□ -0.47
HLA-DQA1P01909 STARP1-201ENST00000397973 869 ntBASIC12.13□□□□□ -0.47
HLA-DQA1P01909 RCN1P1-201ENST00000400413 996 ntBASIC12.13□□□□□ -0.47
HLA-DQA1P01909 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 AC112907.2-201ENST00000448639 330 ntBASIC12.13□□□□□ -0.47
HLA-DQA1P01909 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 SNX5-210ENST00000481323 562 ntTSL 3 BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 C18orf15-201ENST00000623680 2534 ntBASIC12.13□□□□□ -0.47
HLA-DQA1P01909 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC12.13□□□□□ -0.47
HLA-DQA1P01909 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms