Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC14.15□□□□□ -0.14
LMX1BO60663 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
LMX1BO60663 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC14.15□□□□□ -0.14
LMX1BO60663 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
LMX1BO60663 LCK-206ENST00000373564 2137 ntTSL 5 BASIC14.15□□□□□ -0.14
LMX1BO60663 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
LMX1BO60663 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LMX1BO60663 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
LMX1BO60663 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
LMX1BO60663 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
LMX1BO60663 AC092850.2-201ENST00000623821 2697 ntBASIC14.15□□□□□ -0.14
LMX1BO60663 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
LMX1BO60663 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LMX1BO60663 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LMX1BO60663 U82695.1-201ENST00000635752 1889 ntBASIC14.15□□□□□ -0.14
LMX1BO60663 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC14.15□□□□□ -0.14
LMX1BO60663 AC008677.1-201ENST00000519230 1561 ntBASIC14.15□□□□□ -0.14
LMX1BO60663 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LMX1BO60663 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
LMX1BO60663 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC14.15□□□□□ -0.14
LMX1BO60663 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
LMX1BO60663 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LMX1BO60663 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
LMX1BO60663 CBR1-202ENST00000399191 838 ntTSL 3 BASIC14.15□□□□□ -0.14
LMX1BO60663 VMO1-203ENST00000416307 712 ntTSL 2 BASIC14.15□□□□□ -0.14
LMX1BO60663 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC14.15□□□□□ -0.14
LMX1BO60663 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
LMX1BO60663 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC14.15□□□□□ -0.14
LMX1BO60663 AC067863.1-201ENST00000494933 530 ntBASIC14.15□□□□□ -0.14
LMX1BO60663 GATB-205ENST00000508611 605 ntTSL 2 BASIC14.15□□□□□ -0.14
LMX1BO60663 AC109322.1-201ENST00000524499 1264 ntBASIC14.15□□□□□ -0.14
LMX1BO60663 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LMX1BO60663 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC14.15□□□□□ -0.14
LMX1BO60663 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
LMX1BO60663 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
LMX1BO60663 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC14.15□□□□□ -0.14
LMX1BO60663 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LMX1BO60663 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LMX1BO60663 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC14.15□□□□□ -0.14
LMX1BO60663 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
LMX1BO60663 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LMX1BO60663 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LMX1BO60663 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LMX1BO60663 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LMX1BO60663 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LMX1BO60663 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC14.15□□□□□ -0.14
LMX1BO60663 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
LMX1BO60663 AC068418.2-201ENST00000577309 3703 ntBASIC14.15□□□□□ -0.14
LMX1BO60663 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC14.15□□□□□ -0.14
LMX1BO60663 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
LMX1BO60663 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
LMX1BO60663 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC14.14□□□□□ -0.15
LMX1BO60663 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LMX1BO60663 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC14.14□□□□□ -0.15
LMX1BO60663 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
LMX1BO60663 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
LMX1BO60663 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
LMX1BO60663 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC14.14□□□□□ -0.15
LMX1BO60663 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC14.14□□□□□ -0.15
LMX1BO60663 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
LMX1BO60663 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC14.14□□□□□ -0.15
LMX1BO60663 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
LMX1BO60663 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LMX1BO60663 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LMX1BO60663 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LMX1BO60663 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LMX1BO60663 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
LMX1BO60663 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
LMX1BO60663 HNRNPFP1-201ENST00000391730 1133 ntBASIC14.14□□□□□ -0.15
LMX1BO60663 AC002056.1-201ENST00000395613 760 ntBASIC14.14□□□□□ -0.15
LMX1BO60663 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC14.14□□□□□ -0.15
LMX1BO60663 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
LMX1BO60663 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC14.14□□□□□ -0.15
LMX1BO60663 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC14.14□□□□□ -0.15
LMX1BO60663 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
LMX1BO60663 NMU-203ENST00000507338 658 ntTSL 3 BASIC14.14□□□□□ -0.15
LMX1BO60663 RNA5SP421-201ENST00000516864 134 ntBASIC14.14□□□□□ -0.15
LMX1BO60663 MIR4745-201ENST00000577608 62 ntBASIC14.14□□□□□ -0.15
LMX1BO60663 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC14.14□□□□□ -0.15
LMX1BO60663 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
LMX1BO60663 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC14.14□□□□□ -0.15
LMX1BO60663 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
LMX1BO60663 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
LMX1BO60663 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC14.14□□□□□ -0.15
LMX1BO60663 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
LMX1BO60663 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LMX1BO60663 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LMX1BO60663 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
LMX1BO60663 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
LMX1BO60663 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC14.14□□□□□ -0.15
LMX1BO60663 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LMX1BO60663 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC14.14□□□□□ -0.15
LMX1BO60663 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC14.14□□□□□ -0.15
LMX1BO60663 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC14.14□□□□□ -0.15
LMX1BO60663 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
LMX1BO60663 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
LMX1BO60663 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LMX1BO60663 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LMX1BO60663 ING5-213ENST00000636051 4199 ntTSL 5 BASIC14.13□□□□□ -0.15
LMX1BO60663 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms