Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC16.9■□□□□ 0.3
CDH9Q9ULB4 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDH9Q9ULB4 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.9■□□□□ 0.3
CDH9Q9ULB4 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC16.9■□□□□ 0.3
CDH9Q9ULB4 SPDYE19P-201ENST00000338590 713 ntBASIC16.9■□□□□ 0.3
CDH9Q9ULB4 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC16.9■□□□□ 0.3
CDH9Q9ULB4 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDH9Q9ULB4 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CDH9Q9ULB4 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC16.9■□□□□ 0.3
CDH9Q9ULB4 TARDBPP1-201ENST00000442013 1203 ntBASIC16.9■□□□□ 0.3
CDH9Q9ULB4 GNAQP1-201ENST00000444815 1067 ntBASIC16.9■□□□□ 0.3
CDH9Q9ULB4 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC16.9■□□□□ 0.3
CDH9Q9ULB4 CRB3P1-201ENST00000449338 276 ntBASIC16.9■□□□□ 0.3
CDH9Q9ULB4 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC16.9■□□□□ 0.3
CDH9Q9ULB4 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC16.9■□□□□ 0.3
CDH9Q9ULB4 TIMM17BP1-201ENST00000545713 516 ntBASIC16.9■□□□□ 0.3
CDH9Q9ULB4 AC190387.1-201ENST00000551683 408 ntBASIC16.9■□□□□ 0.3
CDH9Q9ULB4 ARL16-202ENST00000570561 768 ntTSL 2 BASIC16.9■□□□□ 0.3
CDH9Q9ULB4 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC16.9■□□□□ 0.3
CDH9Q9ULB4 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC16.9■□□□□ 0.3
CDH9Q9ULB4 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC16.9■□□□□ 0.3
CDH9Q9ULB4 AC004790.1-201ENST00000612686 536 ntBASIC16.9■□□□□ 0.3
CDH9Q9ULB4 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDH9Q9ULB4 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
CDH9Q9ULB4 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.9■□□□□ 0.3
CDH9Q9ULB4 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
CDH9Q9ULB4 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CDH9Q9ULB4 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDH9Q9ULB4 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDH9Q9ULB4 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.9■□□□□ 0.3
CDH9Q9ULB4 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
CDH9Q9ULB4 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CDH9Q9ULB4 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
CDH9Q9ULB4 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CDH9Q9ULB4 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CDH9Q9ULB4 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.3
CDH9Q9ULB4 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
CDH9Q9ULB4 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC16.89■□□□□ 0.3
CDH9Q9ULB4 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.3
CDH9Q9ULB4 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.3
CDH9Q9ULB4 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.3
CDH9Q9ULB4 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDH9Q9ULB4 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDH9Q9ULB4 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDH9Q9ULB4 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.89■□□□□ 0.29
CDH9Q9ULB4 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.89■□□□□ 0.29
CDH9Q9ULB4 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CDH9Q9ULB4 AC007541.1-201ENST00000570282 1469 ntBASIC16.89■□□□□ 0.29
CDH9Q9ULB4 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDH9Q9ULB4 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC16.89■□□□□ 0.29
CDH9Q9ULB4 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CDH9Q9ULB4 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
CDH9Q9ULB4 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDH9Q9ULB4 AC136604.1-201ENST00000418535 575 ntBASIC16.89■□□□□ 0.29
CDH9Q9ULB4 NME4-207ENST00000450036 985 ntTSL 3 BASIC16.89■□□□□ 0.29
CDH9Q9ULB4 AC093004.1-201ENST00000508850 424 ntBASIC16.89■□□□□ 0.29
CDH9Q9ULB4 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC16.89■□□□□ 0.29
CDH9Q9ULB4 COQ6-210ENST00000554920 649 ntTSL 3 BASIC16.89■□□□□ 0.29
CDH9Q9ULB4 HNRNPUP1-201ENST00000554987 333 ntBASIC16.89■□□□□ 0.29
CDH9Q9ULB4 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
CDH9Q9ULB4 AL132655.2-201ENST00000596276 594 ntBASIC16.89■□□□□ 0.29
CDH9Q9ULB4 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.89■□□□□ 0.29
CDH9Q9ULB4 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
CDH9Q9ULB4 PCDHB19P-201ENST00000570871 2371 ntBASIC16.89■□□□□ 0.29
CDH9Q9ULB4 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDH9Q9ULB4 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDH9Q9ULB4 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDH9Q9ULB4 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDH9Q9ULB4 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CDH9Q9ULB4 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.89■□□□□ 0.29
CDH9Q9ULB4 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDH9Q9ULB4 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDH9Q9ULB4 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC16.89■□□□□ 0.29
CDH9Q9ULB4 TNRC18P3-201ENST00000441896 2691 ntBASIC16.89■□□□□ 0.29
CDH9Q9ULB4 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDH9Q9ULB4 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CDH9Q9ULB4 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CDH9Q9ULB4 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.89■□□□□ 0.29
CDH9Q9ULB4 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDH9Q9ULB4 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
CDH9Q9ULB4 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDH9Q9ULB4 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CDH9Q9ULB4 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDH9Q9ULB4 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDH9Q9ULB4 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
CDH9Q9ULB4 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
CDH9Q9ULB4 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDH9Q9ULB4 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDH9Q9ULB4 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDH9Q9ULB4 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CDH9Q9ULB4 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
CDH9Q9ULB4 DFFBP1-201ENST00000433250 979 ntBASIC16.88■□□□□ 0.29
CDH9Q9ULB4 AL353779.1-201ENST00000434793 351 ntBASIC16.88■□□□□ 0.29
CDH9Q9ULB4 TAF8-206ENST00000472818 719 ntTSL 2 BASIC16.88■□□□□ 0.29
CDH9Q9ULB4 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
CDH9Q9ULB4 FTH1-202ENST00000526640 786 ntTSL 2 BASIC16.88■□□□□ 0.29
CDH9Q9ULB4 EHF-205ENST00000527935 557 ntTSL 2 BASIC16.88■□□□□ 0.29
CDH9Q9ULB4 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC16.88■□□□□ 0.29
CDH9Q9ULB4 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC16.88■□□□□ 0.29
CDH9Q9ULB4 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms