Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 LBH-204ENST00000406087 559 ntTSL 4 BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 AC007967.2-201ENST00000432613 625 ntBASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 PENK-208ENST00000523051 772 ntTSL 5 BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 RARRES2P8-201ENST00000566335 367 ntBASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 AL513190.1-201ENST00000621254 727 ntBASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 RAC2-202ENST00000401529 569 ntTSL 4 BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 RPS8P6-201ENST00000426177 609 ntBASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 INO80E-210ENST00000567705 880 ntTSL 3 BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMA1Q9UHB6 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIMA1Q9UHB6 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
LIMA1Q9UHB6 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIMA1Q9UHB6 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIMA1Q9UHB6 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC17.52■□□□□ 0.4
LIMA1Q9UHB6 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIMA1Q9UHB6 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC17.52■□□□□ 0.4
LIMA1Q9UHB6 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC17.52■□□□□ 0.4
LIMA1Q9UHB6 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIMA1Q9UHB6 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIMA1Q9UHB6 AC004987.2-201ENST00000395959 1148 ntBASIC17.52■□□□□ 0.4
LIMA1Q9UHB6 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
LIMA1Q9UHB6 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC17.52■□□□□ 0.4
LIMA1Q9UHB6 AC112191.1-201ENST00000523689 701 ntBASIC17.52■□□□□ 0.4
LIMA1Q9UHB6 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC17.52■□□□□ 0.4
LIMA1Q9UHB6 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC17.52■□□□□ 0.4
LIMA1Q9UHB6 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC17.52■□□□□ 0.4
LIMA1Q9UHB6 NKG7-205ENST00000600427 520 ntTSL 3 BASIC17.52■□□□□ 0.4
LIMA1Q9UHB6 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIMA1Q9UHB6 TCAF2P1-201ENST00000291129 2421 ntBASIC17.52■□□□□ 0.4
LIMA1Q9UHB6 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LIMA1Q9UHB6 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LIMA1Q9UHB6 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.39
LIMA1Q9UHB6 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC17.52■□□□□ 0.39
LIMA1Q9UHB6 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC17.52■□□□□ 0.39
LIMA1Q9UHB6 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC17.52■□□□□ 0.39
LIMA1Q9UHB6 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
LIMA1Q9UHB6 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
LIMA1Q9UHB6 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC17.52■□□□□ 0.39
LIMA1Q9UHB6 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms