Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIMD1Q9UGP4 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIMD1Q9UGP4 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIMD1Q9UGP4 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LIMD1Q9UGP4 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LIMD1Q9UGP4 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LIMD1Q9UGP4 RN7SL399P-201ENST00000471648 279 ntBASIC16.72■□□□□ 0.27
LIMD1Q9UGP4 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC16.72■□□□□ 0.27
LIMD1Q9UGP4 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC16.72■□□□□ 0.27
LIMD1Q9UGP4 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC16.72■□□□□ 0.27
LIMD1Q9UGP4 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC16.72■□□□□ 0.27
LIMD1Q9UGP4 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC16.72■□□□□ 0.27
LIMD1Q9UGP4 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC16.72■□□□□ 0.27
LIMD1Q9UGP4 LINC02281-201ENST00000549013 375 ntTSL 3 BASIC16.72■□□□□ 0.27
LIMD1Q9UGP4 AC025048.3-201ENST00000590609 569 ntBASIC16.72■□□□□ 0.27
LIMD1Q9UGP4 AC020765.3-201ENST00000613051 740 ntBASIC16.72■□□□□ 0.27
LIMD1Q9UGP4 AC005702.4-201ENST00000618393 416 ntBASIC16.72■□□□□ 0.27
LIMD1Q9UGP4 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LIMD1Q9UGP4 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
LIMD1Q9UGP4 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.72■□□□□ 0.27
LIMD1Q9UGP4 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LIMD1Q9UGP4 AC020907.1-201ENST00000616460 1350 ntBASIC16.72■□□□□ 0.27
LIMD1Q9UGP4 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LIMD1Q9UGP4 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.72■□□□□ 0.27
LIMD1Q9UGP4 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.72■□□□□ 0.27
LIMD1Q9UGP4 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
LIMD1Q9UGP4 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC16.72■□□□□ 0.27
LIMD1Q9UGP4 AC092068.3-201ENST00000587894 2016 ntBASIC16.72■□□□□ 0.27
LIMD1Q9UGP4 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 RAB5A-203ENST00000422242 1443 ntTSL 2 BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 KRT8P22-201ENST00000562317 1415 ntBASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 PCDHB17P-201ENST00000539533 2393 ntBASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 AC099336.1-201ENST00000417053 1171 ntBASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 APRT-204ENST00000563655 709 ntTSL 5 BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 ABBA01031660.1-201ENST00000635219 756 ntBASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.71■□□□□ 0.27
LIMD1Q9UGP4 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC16.71■□□□□ 0.26
LIMD1Q9UGP4 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC16.71■□□□□ 0.26
LIMD1Q9UGP4 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.26
LIMD1Q9UGP4 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
LIMD1Q9UGP4 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
LIMD1Q9UGP4 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC16.71■□□□□ 0.26
LIMD1Q9UGP4 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.26
LIMD1Q9UGP4 AL512652.2-201ENST00000625156 1716 ntBASIC16.7■□□□□ 0.26
LIMD1Q9UGP4 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIMD1Q9UGP4 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.7■□□□□ 0.26
LIMD1Q9UGP4 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIMD1Q9UGP4 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIMD1Q9UGP4 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIMD1Q9UGP4 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
LIMD1Q9UGP4 AC018695.7-201ENST00000624587 2492 ntBASIC16.7■□□□□ 0.26
LIMD1Q9UGP4 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LIMD1Q9UGP4 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.7■□□□□ 0.26
LIMD1Q9UGP4 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LIMD1Q9UGP4 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LIMD1Q9UGP4 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
LIMD1Q9UGP4 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
LIMD1Q9UGP4 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LIMD1Q9UGP4 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LIMD1Q9UGP4 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC16.7■□□□□ 0.26
LIMD1Q9UGP4 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC16.7■□□□□ 0.26
LIMD1Q9UGP4 AL355994.2-201ENST00000447882 704 ntBASIC16.7■□□□□ 0.26
LIMD1Q9UGP4 CSF2RBP1-201ENST00000447905 391 ntBASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms