Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC18.89■□□□□ 0.61
NKX2-3Q8TAU0 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC18.89■□□□□ 0.61
NKX2-3Q8TAU0 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC18.89■□□□□ 0.61
NKX2-3Q8TAU0 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
NKX2-3Q8TAU0 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC18.89■□□□□ 0.61
NKX2-3Q8TAU0 GALT-202ENST00000450095 1280 ntTSL 2 BASIC18.89■□□□□ 0.61
NKX2-3Q8TAU0 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
NKX2-3Q8TAU0 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC18.89■□□□□ 0.61
NKX2-3Q8TAU0 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC18.89■□□□□ 0.61
NKX2-3Q8TAU0 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC18.89■□□□□ 0.61
NKX2-3Q8TAU0 AC044860.1-202ENST00000559481 777 ntBASIC18.89■□□□□ 0.61
NKX2-3Q8TAU0 APOC4-201ENST00000591600 348 ntTSL 3 BASIC18.89■□□□□ 0.61
NKX2-3Q8TAU0 RNA5-8SN1-201ENST00000610460 153 ntBASIC18.89■□□□□ 0.61
NKX2-3Q8TAU0 RNA5-8SN5-202ENST00000612463 153 ntBASIC18.89■□□□□ 0.61
NKX2-3Q8TAU0 RNA5-8SN4-201ENST00000613359 153 ntBASIC18.89■□□□□ 0.61
NKX2-3Q8TAU0 RNA5-8SN5-201ENST00000619471 153 ntBASIC18.89■□□□□ 0.61
NKX2-3Q8TAU0 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
NKX2-3Q8TAU0 REXO1L1P-202ENST00000608646 1974 ntBASIC18.89■□□□□ 0.61
NKX2-3Q8TAU0 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
NKX2-3Q8TAU0 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
NKX2-3Q8TAU0 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
NKX2-3Q8TAU0 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
NKX2-3Q8TAU0 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
NKX2-3Q8TAU0 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC18.89■□□□□ 0.61
NKX2-3Q8TAU0 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
NKX2-3Q8TAU0 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
NKX2-3Q8TAU0 AC007950.2-201ENST00000615045 2347 ntBASIC18.89■□□□□ 0.61
NKX2-3Q8TAU0 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
NKX2-3Q8TAU0 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
NKX2-3Q8TAU0 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
NKX2-3Q8TAU0 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC18.89■□□□□ 0.61
NKX2-3Q8TAU0 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC18.89■□□□□ 0.61
NKX2-3Q8TAU0 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC18.89■□□□□ 0.61
NKX2-3Q8TAU0 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
NKX2-3Q8TAU0 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
NKX2-3Q8TAU0 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
NKX2-3Q8TAU0 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
NKX2-3Q8TAU0 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NKX2-3Q8TAU0 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NKX2-3Q8TAU0 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.88■□□□□ 0.61
NKX2-3Q8TAU0 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NKX2-3Q8TAU0 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
NKX2-3Q8TAU0 AC004987.2-201ENST00000395959 1148 ntBASIC18.88■□□□□ 0.61
NKX2-3Q8TAU0 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
NKX2-3Q8TAU0 NME6-203ENST00000415644 849 ntTSL 2 BASIC18.88■□□□□ 0.61
NKX2-3Q8TAU0 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
NKX2-3Q8TAU0 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NKX2-3Q8TAU0 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC18.88■□□□□ 0.61
NKX2-3Q8TAU0 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
NKX2-3Q8TAU0 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC18.88■□□□□ 0.61
NKX2-3Q8TAU0 AC097359.3-201ENST00000603982 1210 ntBASIC18.88■□□□□ 0.61
NKX2-3Q8TAU0 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
NKX2-3Q8TAU0 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC18.88■□□□□ 0.61
NKX2-3Q8TAU0 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
NKX2-3Q8TAU0 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
NKX2-3Q8TAU0 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
NKX2-3Q8TAU0 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC18.88■□□□□ 0.61
NKX2-3Q8TAU0 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
NKX2-3Q8TAU0 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NKX2-3Q8TAU0 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NKX2-3Q8TAU0 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
NKX2-3Q8TAU0 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
NKX2-3Q8TAU0 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
NKX2-3Q8TAU0 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
NKX2-3Q8TAU0 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
NKX2-3Q8TAU0 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
NKX2-3Q8TAU0 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
NKX2-3Q8TAU0 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.87■□□□□ 0.61
NKX2-3Q8TAU0 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
NKX2-3Q8TAU0 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC18.87■□□□□ 0.61
NKX2-3Q8TAU0 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC18.87■□□□□ 0.61
NKX2-3Q8TAU0 KRT8P37-201ENST00000451609 1420 ntBASIC18.87■□□□□ 0.61
NKX2-3Q8TAU0 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
NKX2-3Q8TAU0 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC18.87■□□□□ 0.61
NKX2-3Q8TAU0 AL589987.1-201ENST00000453380 819 ntBASIC18.87■□□□□ 0.61
NKX2-3Q8TAU0 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
NKX2-3Q8TAU0 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
NKX2-3Q8TAU0 PTK7-212ENST00000476760 902 ntTSL 2 BASIC18.87■□□□□ 0.61
NKX2-3Q8TAU0 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC18.87■□□□□ 0.61
NKX2-3Q8TAU0 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
NKX2-3Q8TAU0 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
NKX2-3Q8TAU0 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC18.87■□□□□ 0.61
NKX2-3Q8TAU0 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
NKX2-3Q8TAU0 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC18.87■□□□□ 0.61
NKX2-3Q8TAU0 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
NKX2-3Q8TAU0 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
NKX2-3Q8TAU0 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC18.87■□□□□ 0.61
NKX2-3Q8TAU0 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
NKX2-3Q8TAU0 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NKX2-3Q8TAU0 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
NKX2-3Q8TAU0 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NKX2-3Q8TAU0 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NKX2-3Q8TAU0 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NKX2-3Q8TAU0 RPS19-201ENST00000221975 500 ntTSL 3 BASIC18.86■□□□□ 0.61
NKX2-3Q8TAU0 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
NKX2-3Q8TAU0 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
NKX2-3Q8TAU0 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NKX2-3Q8TAU0 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
NKX2-3Q8TAU0 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
NKX2-3Q8TAU0 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms