Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
KRT28Q7Z3Y7 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC21.39■■□□□ 1.02
KRT28Q7Z3Y7 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.02
KRT28Q7Z3Y7 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC21.39■■□□□ 1.02
KRT28Q7Z3Y7 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
KRT28Q7Z3Y7 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 KRT8P35-201ENST00000483942 1338 ntBASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 HNRNPA1P32-201ENST00000396326 963 ntBASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 FXNP2-201ENST00000411625 547 ntBASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 CHMP4BP1-201ENST00000556017 588 ntBASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 MIR6727-201ENST00000620702 65 ntBASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 SNX1-214ENST00000625244 324 ntTSL 5 BASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
KRT28Q7Z3Y7 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
KRT28Q7Z3Y7 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
KRT28Q7Z3Y7 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
KRT28Q7Z3Y7 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
KRT28Q7Z3Y7 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
KRT28Q7Z3Y7 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC21.38■■□□□ 1.01
KRT28Q7Z3Y7 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
KRT28Q7Z3Y7 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC21.38■■□□□ 1.01
KRT28Q7Z3Y7 CSH2-202ENST00000345366 598 ntTSL 5 BASIC21.38■■□□□ 1.01
KRT28Q7Z3Y7 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
KRT28Q7Z3Y7 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
KRT28Q7Z3Y7 SUN1-204ENST00000403868 978 ntTSL 2 BASIC21.38■■□□□ 1.01
KRT28Q7Z3Y7 NUS1P3-201ENST00000423502 862 ntBASIC21.38■■□□□ 1.01
KRT28Q7Z3Y7 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC21.38■■□□□ 1.01
KRT28Q7Z3Y7 APOA2-204ENST00000464492 530 ntTSL 3 BASIC21.38■■□□□ 1.01
KRT28Q7Z3Y7 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC21.38■■□□□ 1.01
KRT28Q7Z3Y7 MIR3619-201ENST00000579667 83 ntBASIC21.38■■□□□ 1.01
KRT28Q7Z3Y7 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC21.38■■□□□ 1.01
KRT28Q7Z3Y7 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC21.38■■□□□ 1.01
KRT28Q7Z3Y7 AL451050.2-201ENST00000606967 682 ntBASIC21.38■■□□□ 1.01
KRT28Q7Z3Y7 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC21.38■■□□□ 1.01
KRT28Q7Z3Y7 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC21.38■■□□□ 1.01
KRT28Q7Z3Y7 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC21.38■■□□□ 1.01
KRT28Q7Z3Y7 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
KRT28Q7Z3Y7 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC21.38■■□□□ 1.01
KRT28Q7Z3Y7 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
KRT28Q7Z3Y7 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
KRT28Q7Z3Y7 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC21.38■■□□□ 1.01
KRT28Q7Z3Y7 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC21.38■■□□□ 1.01
KRT28Q7Z3Y7 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC21.38■■□□□ 1.01
KRT28Q7Z3Y7 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
KRT28Q7Z3Y7 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC21.38■■□□□ 1.01
KRT28Q7Z3Y7 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
KRT28Q7Z3Y7 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC21.37■■□□□ 1.01
KRT28Q7Z3Y7 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
KRT28Q7Z3Y7 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
KRT28Q7Z3Y7 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
KRT28Q7Z3Y7 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
KRT28Q7Z3Y7 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC21.37■■□□□ 1.01
KRT28Q7Z3Y7 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
KRT28Q7Z3Y7 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
KRT28Q7Z3Y7 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
KRT28Q7Z3Y7 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC21.37■■□□□ 1.01
KRT28Q7Z3Y7 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
KRT28Q7Z3Y7 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC21.37■■□□□ 1.01
KRT28Q7Z3Y7 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC21.37■■□□□ 1.01
KRT28Q7Z3Y7 CD8B2-202ENST00000417670 633 ntBASIC21.37■■□□□ 1.01
KRT28Q7Z3Y7 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC21.37■■□□□ 1.01
KRT28Q7Z3Y7 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
KRT28Q7Z3Y7 NAT9-224ENST00000583757 583 ntTSL 3 BASIC21.37■■□□□ 1.01
KRT28Q7Z3Y7 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
KRT28Q7Z3Y7 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
KRT28Q7Z3Y7 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC21.37■■□□□ 1.01
KRT28Q7Z3Y7 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
KRT28Q7Z3Y7 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
KRT28Q7Z3Y7 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC21.37■■□□□ 1.01
KRT28Q7Z3Y7 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC21.37■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms