Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 AL353705.2-201ENST00000428243 662 ntBASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 DAD1-205ENST00000543337 501 ntTSL 3 BASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 AC026150.2-201ENST00000564693 1156 ntBASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 AC018529.1-201ENST00000613063 361 ntBASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
SYNE3Q6ZMZ3 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC18.93■□□□□ 0.62
SYNE3Q6ZMZ3 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SYNE3Q6ZMZ3 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC18.93■□□□□ 0.62
SYNE3Q6ZMZ3 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SYNE3Q6ZMZ3 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SYNE3Q6ZMZ3 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SYNE3Q6ZMZ3 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SYNE3Q6ZMZ3 AC024909.3-201ENST00000611513 2257 ntBASIC18.93■□□□□ 0.62
SYNE3Q6ZMZ3 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SYNE3Q6ZMZ3 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC18.93■□□□□ 0.62
SYNE3Q6ZMZ3 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SYNE3Q6ZMZ3 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC18.93■□□□□ 0.62
SYNE3Q6ZMZ3 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SYNE3Q6ZMZ3 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
SYNE3Q6ZMZ3 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
SYNE3Q6ZMZ3 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SYNE3Q6ZMZ3 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SYNE3Q6ZMZ3 GPS2P2-201ENST00000430745 888 ntBASIC18.93■□□□□ 0.62
SYNE3Q6ZMZ3 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC18.93■□□□□ 0.62
SYNE3Q6ZMZ3 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC18.93■□□□□ 0.62
SYNE3Q6ZMZ3 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC18.93■□□□□ 0.62
SYNE3Q6ZMZ3 AP001160.2-201ENST00000596071 487 ntBASIC18.93■□□□□ 0.62
SYNE3Q6ZMZ3 AC003101.2-201ENST00000612557 442 ntBASIC18.93■□□□□ 0.62
SYNE3Q6ZMZ3 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
SYNE3Q6ZMZ3 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC18.93■□□□□ 0.62
SYNE3Q6ZMZ3 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
SYNE3Q6ZMZ3 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SYNE3Q6ZMZ3 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC18.93■□□□□ 0.62
SYNE3Q6ZMZ3 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
SYNE3Q6ZMZ3 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SYNE3Q6ZMZ3 AC132872.4-202ENST00000622924 2756 ntBASIC18.93■□□□□ 0.62
SYNE3Q6ZMZ3 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SYNE3Q6ZMZ3 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
SYNE3Q6ZMZ3 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
SYNE3Q6ZMZ3 AL603832.2-201ENST00000566195 2125 ntBASIC18.92■□□□□ 0.62
SYNE3Q6ZMZ3 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SYNE3Q6ZMZ3 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SYNE3Q6ZMZ3 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC18.92■□□□□ 0.62
SYNE3Q6ZMZ3 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC18.92■□□□□ 0.62
SYNE3Q6ZMZ3 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SYNE3Q6ZMZ3 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
SYNE3Q6ZMZ3 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
SYNE3Q6ZMZ3 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SYNE3Q6ZMZ3 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SYNE3Q6ZMZ3 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
SYNE3Q6ZMZ3 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SYNE3Q6ZMZ3 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC18.92■□□□□ 0.62
SYNE3Q6ZMZ3 SPDYE7P-202ENST00000420373 878 ntBASIC18.92■□□□□ 0.62
SYNE3Q6ZMZ3 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC18.92■□□□□ 0.62
SYNE3Q6ZMZ3 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC18.92■□□□□ 0.62
SYNE3Q6ZMZ3 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC18.92■□□□□ 0.62
SYNE3Q6ZMZ3 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC18.92■□□□□ 0.62
SYNE3Q6ZMZ3 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SYNE3Q6ZMZ3 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC18.92■□□□□ 0.62
SYNE3Q6ZMZ3 AC027612.4-201ENST00000605371 583 ntBASIC18.92■□□□□ 0.62
SYNE3Q6ZMZ3 AP001059.3-201ENST00000619053 235 ntBASIC18.92■□□□□ 0.62
SYNE3Q6ZMZ3 LINC00628-201ENST00000628516 1289 ntBASIC18.92■□□□□ 0.62
SYNE3Q6ZMZ3 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
SYNE3Q6ZMZ3 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SYNE3Q6ZMZ3 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
SYNE3Q6ZMZ3 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
SYNE3Q6ZMZ3 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC18.92■□□□□ 0.62
SYNE3Q6ZMZ3 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SYNE3Q6ZMZ3 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SYNE3Q6ZMZ3 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SYNE3Q6ZMZ3 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC18.92■□□□□ 0.62
SYNE3Q6ZMZ3 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC18.92■□□□□ 0.62
SYNE3Q6ZMZ3 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SYNE3Q6ZMZ3 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SYNE3Q6ZMZ3 CDC14C-201ENST00000428251 1719 ntBASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms