Protein–RNA interactions for Protein: Q2M329

CCDC96, Coiled-coil domain-containing protein 96, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC96Q2M329 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC96Q2M329 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
CCDC96Q2M329 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC96Q2M329 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC96Q2M329 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC18.69■□□□□ 0.58
CCDC96Q2M329 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC18.69■□□□□ 0.58
CCDC96Q2M329 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
CCDC96Q2M329 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC18.69■□□□□ 0.58
CCDC96Q2M329 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC96Q2M329 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC96Q2M329 PCDH8P1-201ENST00000428983 2773 ntBASIC18.69■□□□□ 0.58
CCDC96Q2M329 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC18.69■□□□□ 0.58
CCDC96Q2M329 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC18.69■□□□□ 0.58
CCDC96Q2M329 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC96Q2M329 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
CCDC96Q2M329 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC96Q2M329 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC96Q2M329 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC96Q2M329 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC18.69■□□□□ 0.58
CCDC96Q2M329 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC18.69■□□□□ 0.58
CCDC96Q2M329 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC96Q2M329 SPTLC1P1-201ENST00000447199 261 ntBASIC18.69■□□□□ 0.58
CCDC96Q2M329 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC18.69■□□□□ 0.58
CCDC96Q2M329 RAB35-202ENST00000534951 939 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC96Q2M329 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC96Q2M329 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CCDC96Q2M329 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC96Q2M329 RNA5-8SN1-201ENST00000610460 153 ntBASIC18.69■□□□□ 0.58
CCDC96Q2M329 RNA5-8SN5-202ENST00000612463 153 ntBASIC18.69■□□□□ 0.58
CCDC96Q2M329 RNA5-8SN4-201ENST00000613359 153 ntBASIC18.69■□□□□ 0.58
CCDC96Q2M329 RNA5-8SN5-201ENST00000619471 153 ntBASIC18.69■□□□□ 0.58
CCDC96Q2M329 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC96Q2M329 AL109936.8-201ENST00000641772 604 ntBASIC18.69■□□□□ 0.58
CCDC96Q2M329 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
CCDC96Q2M329 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC96Q2M329 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC18.69■□□□□ 0.58
CCDC96Q2M329 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC96Q2M329 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC96Q2M329 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
CCDC96Q2M329 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC96Q2M329 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC96Q2M329 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC96Q2M329 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC18.69■□□□□ 0.58
CCDC96Q2M329 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC96Q2M329 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CCDC96Q2M329 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
CCDC96Q2M329 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC18.69■□□□□ 0.58
CCDC96Q2M329 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC18.69■□□□□ 0.58
CCDC96Q2M329 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC18.69■□□□□ 0.58
CCDC96Q2M329 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC18.69■□□□□ 0.58
CCDC96Q2M329 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC18.69■□□□□ 0.58
CCDC96Q2M329 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC18.68■□□□□ 0.58
CCDC96Q2M329 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC96Q2M329 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC96Q2M329 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CCDC96Q2M329 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC18.68■□□□□ 0.58
CCDC96Q2M329 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC96Q2M329 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
CCDC96Q2M329 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC96Q2M329 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC96Q2M329 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC18.68■□□□□ 0.58
CCDC96Q2M329 ELP6-209ENST00000446787 894 ntTSL 3 BASIC18.68■□□□□ 0.58
CCDC96Q2M329 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC18.68■□□□□ 0.58
CCDC96Q2M329 TAF8-206ENST00000472818 719 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC96Q2M329 FXR1-221ENST00000491674 365 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC96Q2M329 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CCDC96Q2M329 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC18.68■□□□□ 0.58
CCDC96Q2M329 SPDYE18-201ENST00000510091 1050 ntBASIC18.68■□□□□ 0.58
CCDC96Q2M329 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC18.68■□□□□ 0.58
CCDC96Q2M329 ZNF890P-202ENST00000530367 1156 ntBASIC18.68■□□□□ 0.58
CCDC96Q2M329 AC190387.1-201ENST00000551683 408 ntBASIC18.68■□□□□ 0.58
CCDC96Q2M329 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC18.68■□□□□ 0.58
CCDC96Q2M329 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
CCDC96Q2M329 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC96Q2M329 SPIB-207ENST00000597855 564 ntTSL 4 BASIC18.68■□□□□ 0.58
CCDC96Q2M329 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC18.68■□□□□ 0.58
CCDC96Q2M329 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CCDC96Q2M329 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC96Q2M329 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CCDC96Q2M329 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CCDC96Q2M329 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC96Q2M329 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CCDC96Q2M329 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC96Q2M329 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC96Q2M329 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CCDC96Q2M329 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC96Q2M329 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC96Q2M329 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC96Q2M329 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
CCDC96Q2M329 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC96Q2M329 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC96Q2M329 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
CCDC96Q2M329 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC96Q2M329 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC96Q2M329 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC96Q2M329 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC96Q2M329 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC96Q2M329 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC96Q2M329 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC96Q2M329 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms