Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC15.56■□□□□ 0.08
FOXA1P55317 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA1P55317 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA1P55317 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC15.56■□□□□ 0.08
FOXA1P55317 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC15.56■□□□□ 0.08
FOXA1P55317 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC15.56■□□□□ 0.08
FOXA1P55317 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC15.56■□□□□ 0.08
FOXA1P55317 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA1P55317 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA1P55317 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA1P55317 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC15.56■□□□□ 0.08
FOXA1P55317 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA1P55317 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC15.56■□□□□ 0.08
FOXA1P55317 TKT-202ENST00000423516 2075 ntTSL 2 BASIC15.56■□□□□ 0.08
FOXA1P55317 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA1P55317 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC15.56■□□□□ 0.08
FOXA1P55317 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA1P55317 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC15.56■□□□□ 0.08
FOXA1P55317 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
FOXA1P55317 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA1P55317 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA1P55317 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC15.56■□□□□ 0.08
FOXA1P55317 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA1P55317 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
FOXA1P55317 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA1P55317 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
FOXA1P55317 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA1P55317 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
FOXA1P55317 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
FOXA1P55317 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC15.55■□□□□ 0.08
FOXA1P55317 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
FOXA1P55317 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
FOXA1P55317 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
FOXA1P55317 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC15.55■□□□□ 0.08
FOXA1P55317 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
FOXA1P55317 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
FOXA1P55317 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
FOXA1P55317 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
FOXA1P55317 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
FOXA1P55317 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
FOXA1P55317 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC15.55■□□□□ 0.08
FOXA1P55317 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC15.55■□□□□ 0.08
FOXA1P55317 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC15.55■□□□□ 0.08
FOXA1P55317 AC006058.4-201ENST00000624016 1670 ntBASIC15.55■□□□□ 0.08
FOXA1P55317 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
FOXA1P55317 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
FOXA1P55317 BNIP3P1-202ENST00000550043 1585 ntBASIC15.55■□□□□ 0.08
FOXA1P55317 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC15.55■□□□□ 0.08
FOXA1P55317 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC15.55■□□□□ 0.08
FOXA1P55317 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
FOXA1P55317 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC15.55■□□□□ 0.08
FOXA1P55317 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
FOXA1P55317 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
FOXA1P55317 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
FOXA1P55317 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
FOXA1P55317 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC15.55■□□□□ 0.08
FOXA1P55317 RARRES2P8-201ENST00000566335 367 ntBASIC15.55■□□□□ 0.08
FOXA1P55317 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC15.55■□□□□ 0.08
FOXA1P55317 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC15.55■□□□□ 0.08
FOXA1P55317 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC15.55■□□□□ 0.08
FOXA1P55317 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
FOXA1P55317 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
FOXA1P55317 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
FOXA1P55317 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
FOXA1P55317 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
FOXA1P55317 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
FOXA1P55317 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC15.55■□□□□ 0.08
FOXA1P55317 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC15.55■□□□□ 0.08
FOXA1P55317 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
FOXA1P55317 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
FOXA1P55317 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
FOXA1P55317 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC15.54■□□□□ 0.08
FOXA1P55317 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
FOXA1P55317 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
FOXA1P55317 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
FOXA1P55317 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC15.54■□□□□ 0.08
FOXA1P55317 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
FOXA1P55317 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
FOXA1P55317 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
FOXA1P55317 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC15.54■□□□□ 0.08
FOXA1P55317 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC15.54■□□□□ 0.08
FOXA1P55317 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
FOXA1P55317 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC15.54■□□□□ 0.08
FOXA1P55317 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
FOXA1P55317 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
FOXA1P55317 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC15.54■□□□□ 0.08
FOXA1P55317 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
FOXA1P55317 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
FOXA1P55317 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC15.54■□□□□ 0.08
FOXA1P55317 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC15.54■□□□□ 0.08
FOXA1P55317 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC15.54■□□□□ 0.08
FOXA1P55317 AC098859.1-201ENST00000502915 1238 ntBASIC15.54■□□□□ 0.08
FOXA1P55317 AC112191.1-201ENST00000523689 701 ntBASIC15.54■□□□□ 0.08
FOXA1P55317 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC15.54■□□□□ 0.08
FOXA1P55317 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC15.54■□□□□ 0.08
FOXA1P55317 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC15.54■□□□□ 0.08
FOXA1P55317 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC15.54■□□□□ 0.08
FOXA1P55317 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC15.54■□□□□ 0.08
FOXA1P55317 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC15.54■□□□□ 0.08
FOXA1P55317 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms