Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CIITAP33076 ACE-203ENST00000413513 2237 ntTSL 2 BASIC18■□□□□ 0.47
CIITAP33076 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC18■□□□□ 0.47
CIITAP33076 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
CIITAP33076 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CIITAP33076 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC18■□□□□ 0.47
CIITAP33076 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CIITAP33076 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC18■□□□□ 0.47
CIITAP33076 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CIITAP33076 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CIITAP33076 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
CIITAP33076 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CIITAP33076 FLII-221ENST00000578558 2377 ntTSL 5 BASIC18■□□□□ 0.47
CIITAP33076 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC18■□□□□ 0.47
CIITAP33076 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC18■□□□□ 0.47
CIITAP33076 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC18■□□□□ 0.47
CIITAP33076 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC18■□□□□ 0.47
CIITAP33076 GREM1-201ENST00000560677 623 ntTSL 4 BASIC18■□□□□ 0.47
CIITAP33076 MIR4313-201ENST00000580760 101 ntBASIC18■□□□□ 0.47
CIITAP33076 SRD5A3P1-201ENST00000603021 949 ntBASIC18■□□□□ 0.47
CIITAP33076 YTHDF3-AS1-201ENST00000603538 718 ntBASIC18■□□□□ 0.47
CIITAP33076 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CIITAP33076 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
CIITAP33076 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC18■□□□□ 0.47
CIITAP33076 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC18■□□□□ 0.47
CIITAP33076 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC18■□□□□ 0.47
CIITAP33076 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
CIITAP33076 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CIITAP33076 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CIITAP33076 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC18■□□□□ 0.47
CIITAP33076 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CIITAP33076 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
CIITAP33076 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CIITAP33076 AC010491.1-201ENST00000563101 2797 ntBASIC17.99■□□□□ 0.47
CIITAP33076 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
CIITAP33076 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC17.99■□□□□ 0.47
CIITAP33076 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CIITAP33076 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC17.99■□□□□ 0.47
CIITAP33076 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC17.99■□□□□ 0.47
CIITAP33076 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CIITAP33076 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CIITAP33076 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CIITAP33076 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CIITAP33076 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC17.99■□□□□ 0.47
CIITAP33076 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CIITAP33076 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CIITAP33076 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC17.99■□□□□ 0.47
CIITAP33076 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC17.99■□□□□ 0.47
CIITAP33076 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
CIITAP33076 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
CIITAP33076 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CIITAP33076 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CIITAP33076 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CIITAP33076 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
CIITAP33076 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CIITAP33076 AL607033.1-201ENST00000623900 1599 ntBASIC17.99■□□□□ 0.47
CIITAP33076 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC17.99■□□□□ 0.47
CIITAP33076 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CIITAP33076 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CIITAP33076 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CIITAP33076 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CIITAP33076 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC17.98■□□□□ 0.47
CIITAP33076 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CIITAP33076 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CIITAP33076 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CIITAP33076 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CIITAP33076 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
CIITAP33076 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC17.98■□□□□ 0.47
CIITAP33076 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC17.98■□□□□ 0.47
CIITAP33076 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CIITAP33076 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CIITAP33076 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC17.98■□□□□ 0.47
CIITAP33076 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
CIITAP33076 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CIITAP33076 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CIITAP33076 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
CIITAP33076 AC104794.3-201ENST00000566840 1248 ntBASIC17.98■□□□□ 0.47
CIITAP33076 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
CIITAP33076 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
CIITAP33076 LINC01115-203ENST00000606068 577 ntBASIC17.98■□□□□ 0.47
CIITAP33076 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CIITAP33076 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CIITAP33076 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
CIITAP33076 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC17.98■□□□□ 0.47
CIITAP33076 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CIITAP33076 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CIITAP33076 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CIITAP33076 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC17.98■□□□□ 0.47
CIITAP33076 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
CIITAP33076 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CIITAP33076 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
CIITAP33076 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CIITAP33076 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
CIITAP33076 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CIITAP33076 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CIITAP33076 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.97■□□□□ 0.47
CIITAP33076 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CIITAP33076 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CIITAP33076 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.97■□□□□ 0.47
CIITAP33076 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms