Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RXRBP28702 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC20.55■□□□□ 0.88
RXRBP28702 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RXRBP28702 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC20.55■□□□□ 0.88
RXRBP28702 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
RXRBP28702 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RXRBP28702 RN7SKP214-201ENST00000364208 315 ntBASIC20.55■□□□□ 0.88
RXRBP28702 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
RXRBP28702 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC20.55■□□□□ 0.88
RXRBP28702 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC20.55■□□□□ 0.88
RXRBP28702 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC20.55■□□□□ 0.88
RXRBP28702 ITGA9-AS1-205ENST00000438136 578 ntTSL 4 BASIC20.55■□□□□ 0.88
RXRBP28702 CHMP1AP1-201ENST00000445563 662 ntBASIC20.55■□□□□ 0.88
RXRBP28702 AC004540.1-204ENST00000449537 727 ntTSL 2 BASIC20.55■□□□□ 0.88
RXRBP28702 AC018463.1-201ENST00000456674 917 ntBASIC20.55■□□□□ 0.88
RXRBP28702 POU5F1P6-201ENST00000466990 990 ntBASIC20.55■□□□□ 0.88
RXRBP28702 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
RXRBP28702 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RXRBP28702 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC20.55■□□□□ 0.88
RXRBP28702 SNRPF-204ENST00000552085 815 ntTSL 3 BASIC20.55■□□□□ 0.88
RXRBP28702 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC20.55■□□□□ 0.88
RXRBP28702 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC20.55■□□□□ 0.88
RXRBP28702 AL136295.7-201ENST00000619226 1200 ntBASIC20.55■□□□□ 0.88
RXRBP28702 MIR6858-201ENST00000620733 67 ntBASIC20.55■□□□□ 0.88
RXRBP28702 PCGF3-213ENST00000620529 1899 ntBASIC20.55■□□□□ 0.88
RXRBP28702 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RXRBP28702 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RXRBP28702 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC20.55■□□□□ 0.88
RXRBP28702 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RXRBP28702 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
RXRBP28702 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RXRBP28702 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
RXRBP28702 OS9-205ENST00000413095 1660 ntTSL 2 BASIC20.54■□□□□ 0.88
RXRBP28702 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.54■□□□□ 0.88
RXRBP28702 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
RXRBP28702 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
RXRBP28702 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC20.54■□□□□ 0.88
RXRBP28702 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
RXRBP28702 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC20.54■□□□□ 0.88
RXRBP28702 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RXRBP28702 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RXRBP28702 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RXRBP28702 HNRNPA1P41-201ENST00000397777 928 ntBASIC20.54■□□□□ 0.88
RXRBP28702 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC20.54■□□□□ 0.88
RXRBP28702 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
RXRBP28702 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
RXRBP28702 PAQR9-AS1-203ENST00000497652 516 ntTSL 3 BASIC20.54■□□□□ 0.88
RXRBP28702 ALG1L6P-201ENST00000515248 758 ntBASIC20.54■□□□□ 0.88
RXRBP28702 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC20.54■□□□□ 0.88
RXRBP28702 FAM192A-218ENST00000567439 1086 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
RXRBP28702 OR10B1P-201ENST00000601666 907 ntBASIC20.54■□□□□ 0.88
RXRBP28702 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC20.54■□□□□ 0.88
RXRBP28702 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RXRBP28702 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RXRBP28702 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
RXRBP28702 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RXRBP28702 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
RXRBP28702 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
RXRBP28702 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RXRBP28702 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
RXRBP28702 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
RXRBP28702 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC20.54■□□□□ 0.88
RXRBP28702 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC20.54■□□□□ 0.88
RXRBP28702 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RXRBP28702 VILL-207ENST00000465644 1857 ntTSL 5 BASIC20.54■□□□□ 0.88
RXRBP28702 REXO1L1P-202ENST00000608646 1974 ntBASIC20.54■□□□□ 0.88
RXRBP28702 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RXRBP28702 LETM1P2-201ENST00000597330 2178 ntBASIC20.53■□□□□ 0.88
RXRBP28702 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
RXRBP28702 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC20.53■□□□□ 0.88
RXRBP28702 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC20.53■□□□□ 0.88
RXRBP28702 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RXRBP28702 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RXRBP28702 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC20.53■□□□□ 0.88
RXRBP28702 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
RXRBP28702 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC20.53■□□□□ 0.88
RXRBP28702 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RXRBP28702 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC20.53■□□□□ 0.88
RXRBP28702 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
RXRBP28702 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC20.53■□□□□ 0.88
RXRBP28702 NAGK-204ENST00000443872 878 ntTSL 3 BASIC20.53■□□□□ 0.88
RXRBP28702 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
RXRBP28702 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RXRBP28702 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
RXRBP28702 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC20.53■□□□□ 0.88
RXRBP28702 FTLP5-201ENST00000586853 534 ntBASIC20.53■□□□□ 0.88
RXRBP28702 FAM32A-204ENST00000588367 798 ntTSL 2 BASIC20.53■□□□□ 0.88
RXRBP28702 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
RXRBP28702 NAP1L6-202ENST00000641404 1222 ntBASIC20.53■□□□□ 0.88
RXRBP28702 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RXRBP28702 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RXRBP28702 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RXRBP28702 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RXRBP28702 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RXRBP28702 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RXRBP28702 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC20.53■□□□□ 0.88
RXRBP28702 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RXRBP28702 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
RXRBP28702 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
RXRBP28702 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms