Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
LDLRP01130 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LDLRP01130 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
LDLRP01130 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC15.62■□□□□ 0.09
LDLRP01130 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LDLRP01130 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC15.62■□□□□ 0.09
LDLRP01130 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
LDLRP01130 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
LDLRP01130 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC15.62■□□□□ 0.09
LDLRP01130 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LDLRP01130 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LDLRP01130 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LDLRP01130 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC15.62■□□□□ 0.09
LDLRP01130 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC15.62■□□□□ 0.09
LDLRP01130 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC15.62■□□□□ 0.09
LDLRP01130 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC15.62■□□□□ 0.09
LDLRP01130 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LDLRP01130 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC15.62■□□□□ 0.09
LDLRP01130 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC15.62■□□□□ 0.09
LDLRP01130 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC15.62■□□□□ 0.09
LDLRP01130 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC15.62■□□□□ 0.09
LDLRP01130 INO80C-206ENST00000586489 594 ntTSL 3 BASIC15.62■□□□□ 0.09
LDLRP01130 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC15.62■□□□□ 0.09
LDLRP01130 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC15.62■□□□□ 0.09
LDLRP01130 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC15.62■□□□□ 0.09
LDLRP01130 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LDLRP01130 HNRNPRP1-201ENST00000453465 1695 ntBASIC15.62■□□□□ 0.09
LDLRP01130 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
LDLRP01130 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LDLRP01130 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
LDLRP01130 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC15.62■□□□□ 0.09
LDLRP01130 AL671710.1-201ENST00000610245 2349 ntBASIC15.62■□□□□ 0.09
LDLRP01130 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LDLRP01130 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LDLRP01130 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LDLRP01130 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
LDLRP01130 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC15.62■□□□□ 0.09
LDLRP01130 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC15.62■□□□□ 0.09
LDLRP01130 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
LDLRP01130 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC15.62■□□□□ 0.09
LDLRP01130 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
LDLRP01130 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC15.62■□□□□ 0.09
LDLRP01130 ACE-203ENST00000413513 2237 ntTSL 2 BASIC15.62■□□□□ 0.09
LDLRP01130 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LDLRP01130 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LDLRP01130 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LDLRP01130 TNRC18P2-201ENST00000417666 2714 ntBASIC15.61■□□□□ 0.09
LDLRP01130 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
LDLRP01130 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LDLRP01130 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LDLRP01130 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
LDLRP01130 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LDLRP01130 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC15.61■□□□□ 0.09
LDLRP01130 CDC14C-201ENST00000428251 1719 ntBASIC15.61■□□□□ 0.09
LDLRP01130 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC15.61■□□□□ 0.09
LDLRP01130 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LDLRP01130 IGLL3P-201ENST00000412472 434 ntBASIC15.61■□□□□ 0.09
LDLRP01130 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC15.61■□□□□ 0.09
LDLRP01130 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC15.61■□□□□ 0.09
LDLRP01130 FAM58CP-201ENST00000435741 640 ntBASIC15.61■□□□□ 0.09
LDLRP01130 RPS15P9-201ENST00000494093 319 ntBASIC15.61■□□□□ 0.09
LDLRP01130 SMN2-210ENST00000511812 867 ntTSL 2 BASIC15.61■□□□□ 0.09
LDLRP01130 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC15.61■□□□□ 0.09
LDLRP01130 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC15.61■□□□□ 0.09
LDLRP01130 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC15.61■□□□□ 0.09
LDLRP01130 AC005498.2-205ENST00000593218 784 ntBASIC15.61■□□□□ 0.09
LDLRP01130 AC004877.2-201ENST00000623941 599 ntBASIC15.61■□□□□ 0.09
LDLRP01130 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC15.61■□□□□ 0.09
LDLRP01130 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC15.61■□□□□ 0.09
LDLRP01130 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LDLRP01130 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LDLRP01130 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC15.61■□□□□ 0.09
LDLRP01130 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC15.61■□□□□ 0.09
LDLRP01130 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC15.61■□□□□ 0.09
LDLRP01130 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LDLRP01130 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LDLRP01130 AC112504.1-201ENST00000623415 1841 ntBASIC15.61■□□□□ 0.09
LDLRP01130 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LDLRP01130 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LDLRP01130 LINC02447-202ENST00000501888 2146 ntBASIC15.61■□□□□ 0.09
LDLRP01130 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC15.61■□□□□ 0.09
LDLRP01130 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.61■□□□□ 0.09
LDLRP01130 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LDLRP01130 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
LDLRP01130 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
LDLRP01130 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
LDLRP01130 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LDLRP01130 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC15.6■□□□□ 0.09
LDLRP01130 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
LDLRP01130 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
LDLRP01130 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
LDLRP01130 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.6■□□□□ 0.09
LDLRP01130 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
LDLRP01130 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC15.6■□□□□ 0.09
LDLRP01130 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
LDLRP01130 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
LDLRP01130 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
LDLRP01130 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
LDLRP01130 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LDLRP01130 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms