Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
SHANK3Q9BYB0 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SHANK3Q9BYB0 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
SHANK3Q9BYB0 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC20.33■□□□□ 0.84
SHANK3Q9BYB0 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SHANK3Q9BYB0 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
SHANK3Q9BYB0 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC20.33■□□□□ 0.84
SHANK3Q9BYB0 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SHANK3Q9BYB0 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
SHANK3Q9BYB0 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.84
SHANK3Q9BYB0 TISP43-201ENST00000409793 538 ntTSL 4 BASIC20.33■□□□□ 0.84
SHANK3Q9BYB0 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC20.33■□□□□ 0.84
SHANK3Q9BYB0 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC20.33■□□□□ 0.84
SHANK3Q9BYB0 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
SHANK3Q9BYB0 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC20.33■□□□□ 0.84
SHANK3Q9BYB0 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SHANK3Q9BYB0 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
SHANK3Q9BYB0 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
SHANK3Q9BYB0 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC20.33■□□□□ 0.84
SHANK3Q9BYB0 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SHANK3Q9BYB0 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC20.32■□□□□ 0.84
SHANK3Q9BYB0 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHANK3Q9BYB0 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC20.32■□□□□ 0.84
SHANK3Q9BYB0 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHANK3Q9BYB0 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHANK3Q9BYB0 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC20.32■□□□□ 0.84
SHANK3Q9BYB0 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
SHANK3Q9BYB0 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHANK3Q9BYB0 MTHFR-217ENST00000641820 1569 ntBASIC20.32■□□□□ 0.84
SHANK3Q9BYB0 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHANK3Q9BYB0 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
SHANK3Q9BYB0 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SHANK3Q9BYB0 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHANK3Q9BYB0 ADM-202ENST00000524948 584 ntTSL 2 BASIC20.32■□□□□ 0.84
SHANK3Q9BYB0 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC20.32■□□□□ 0.84
SHANK3Q9BYB0 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC20.32■□□□□ 0.84
SHANK3Q9BYB0 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHANK3Q9BYB0 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SHANK3Q9BYB0 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
SHANK3Q9BYB0 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
SHANK3Q9BYB0 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
SHANK3Q9BYB0 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
SHANK3Q9BYB0 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
SHANK3Q9BYB0 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SHANK3Q9BYB0 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SHANK3Q9BYB0 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
SHANK3Q9BYB0 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
SHANK3Q9BYB0 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
SHANK3Q9BYB0 POM121L8P-201ENST00000417732 1281 ntBASIC20.31■□□□□ 0.84
SHANK3Q9BYB0 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC20.31■□□□□ 0.84
SHANK3Q9BYB0 POM121L9P-203ENST00000441984 1285 ntBASIC20.31■□□□□ 0.84
SHANK3Q9BYB0 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
SHANK3Q9BYB0 EIF4HP1-201ENST00000453115 687 ntBASIC20.31■□□□□ 0.84
SHANK3Q9BYB0 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SHANK3Q9BYB0 AC106820.3-201ENST00000561653 397 ntBASIC20.31■□□□□ 0.84
SHANK3Q9BYB0 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC20.31■□□□□ 0.84
SHANK3Q9BYB0 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SHANK3Q9BYB0 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC20.31■□□□□ 0.84
SHANK3Q9BYB0 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SHANK3Q9BYB0 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SHANK3Q9BYB0 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC20.31■□□□□ 0.84
SHANK3Q9BYB0 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SHANK3Q9BYB0 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC20.31■□□□□ 0.84
SHANK3Q9BYB0 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SHANK3Q9BYB0 PGGT1BP2-201ENST00000398621 1028 ntBASIC20.3■□□□□ 0.84
SHANK3Q9BYB0 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SHANK3Q9BYB0 RPS2P36-201ENST00000456516 831 ntBASIC20.3■□□□□ 0.84
SHANK3Q9BYB0 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC20.3■□□□□ 0.84
SHANK3Q9BYB0 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SHANK3Q9BYB0 MIR4313-201ENST00000580760 101 ntBASIC20.3■□□□□ 0.84
SHANK3Q9BYB0 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC20.3■□□□□ 0.84
SHANK3Q9BYB0 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC20.3■□□□□ 0.84
SHANK3Q9BYB0 AL451050.2-201ENST00000606967 682 ntBASIC20.3■□□□□ 0.84
SHANK3Q9BYB0 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC20.3■□□□□ 0.84
SHANK3Q9BYB0 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC20.3■□□□□ 0.84
SHANK3Q9BYB0 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC20.3■□□□□ 0.84
SHANK3Q9BYB0 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHANK3Q9BYB0 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHANK3Q9BYB0 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHANK3Q9BYB0 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SHANK3Q9BYB0 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SHANK3Q9BYB0 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC20.3■□□□□ 0.84
SHANK3Q9BYB0 AC104457.1-201ENST00000401024 814 ntBASIC20.3■□□□□ 0.84
SHANK3Q9BYB0 KRTAP10-13P-201ENST00000412914 571 ntBASIC20.3■□□□□ 0.84
SHANK3Q9BYB0 AC079178.1-201ENST00000420915 656 ntBASIC20.3■□□□□ 0.84
SHANK3Q9BYB0 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC20.3■□□□□ 0.84
SHANK3Q9BYB0 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC20.3■□□□□ 0.84
SHANK3Q9BYB0 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
SHANK3Q9BYB0 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
SHANK3Q9BYB0 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHANK3Q9BYB0 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
SHANK3Q9BYB0 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SHANK3Q9BYB0 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC20.29■□□□□ 0.84
SHANK3Q9BYB0 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC20.29■□□□□ 0.84
SHANK3Q9BYB0 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
SHANK3Q9BYB0 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHANK3Q9BYB0 ARTN-209ENST00000479128 471 ntTSL 3 BASIC20.29■□□□□ 0.84
SHANK3Q9BYB0 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SHANK3Q9BYB0 AP001258.2-201ENST00000529891 490 ntBASIC20.29■□□□□ 0.84
SHANK3Q9BYB0 AC023310.1-201ENST00000554836 735 ntBASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms