Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 TISP43-201ENST00000409793 538 ntTSL 4 BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 HLA-A-202ENST00000376806 1854 ntBASIC15.59■□□□□ 0.09
VPS13AQ96RL7 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 SMS-201ENST00000379404 1174 ntTSL 3 BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 KLK3-207ENST00000595952 969 ntTSL 3 BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 AC004899.1-201ENST00000424687 1714 ntBASIC15.59■□□□□ 0.09
VPS13AQ96RL7 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 KRT18P64-201ENST00000434946 1219 ntBASIC15.59■□□□□ 0.09
VPS13AQ96RL7 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 AC234782.1-201ENST00000451950 919 ntBASIC15.59■□□□□ 0.09
VPS13AQ96RL7 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC15.59■□□□□ 0.09
VPS13AQ96RL7 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.09
VPS13AQ96RL7 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.09
VPS13AQ96RL7 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
VPS13AQ96RL7 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
VPS13AQ96RL7 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC15.58■□□□□ 0.09
VPS13AQ96RL7 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
VPS13AQ96RL7 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
VPS13AQ96RL7 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
VPS13AQ96RL7 AC093813.1-201ENST00000605066 256 ntBASIC15.58■□□□□ 0.08
VPS13AQ96RL7 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
VPS13AQ96RL7 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC15.58■□□□□ 0.08
VPS13AQ96RL7 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
VPS13AQ96RL7 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
VPS13AQ96RL7 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
VPS13AQ96RL7 REXO1L1P-202ENST00000608646 1974 ntBASIC15.58■□□□□ 0.08
VPS13AQ96RL7 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
VPS13AQ96RL7 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
VPS13AQ96RL7 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
VPS13AQ96RL7 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
VPS13AQ96RL7 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC15.58■□□□□ 0.08
VPS13AQ96RL7 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC15.58■□□□□ 0.08
VPS13AQ96RL7 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.08
VPS13AQ96RL7 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
VPS13AQ96RL7 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC15.58■□□□□ 0.08
VPS13AQ96RL7 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
VPS13AQ96RL7 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13AQ96RL7 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13AQ96RL7 PCGF3-213ENST00000620529 1899 ntBASIC15.57■□□□□ 0.08
VPS13AQ96RL7 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
VPS13AQ96RL7 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
VPS13AQ96RL7 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13AQ96RL7 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC15.57■□□□□ 0.08
VPS13AQ96RL7 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC15.57■□□□□ 0.08
VPS13AQ96RL7 RN7SL8P-201ENST00000461771 266 ntBASIC15.57■□□□□ 0.08
VPS13AQ96RL7 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC15.57■□□□□ 0.08
VPS13AQ96RL7 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC15.57■□□□□ 0.08
VPS13AQ96RL7 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC15.57■□□□□ 0.08
VPS13AQ96RL7 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC15.57■□□□□ 0.08
VPS13AQ96RL7 GMFG-209ENST00000600322 622 ntTSL 5 BASIC15.57■□□□□ 0.08
VPS13AQ96RL7 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC15.57■□□□□ 0.08
VPS13AQ96RL7 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13AQ96RL7 LETM1P2-201ENST00000597330 2178 ntBASIC15.57■□□□□ 0.08
VPS13AQ96RL7 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13AQ96RL7 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC15.57■□□□□ 0.08
VPS13AQ96RL7 CNN2P10-201ENST00000443067 918 ntBASIC15.57■□□□□ 0.08
VPS13AQ96RL7 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC15.57■□□□□ 0.08
VPS13AQ96RL7 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13AQ96RL7 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13AQ96RL7 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13AQ96RL7 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13AQ96RL7 ACKR1-201ENST00000368121 1240 ntBASIC15.57■□□□□ 0.08
VPS13AQ96RL7 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13AQ96RL7 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
VPS13AQ96RL7 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC15.57■□□□□ 0.08
VPS13AQ96RL7 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13AQ96RL7 AC004987.2-201ENST00000395959 1148 ntBASIC15.57■□□□□ 0.08
VPS13AQ96RL7 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
VPS13AQ96RL7 CMC1-204ENST00000423894 549 ntTSL 2 BASIC15.57■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms