Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CHFRQ96EP1 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC16.27■□□□□ 0.2
CHFRQ96EP1 AL359711.2-201ENST00000563105 872 ntBASIC16.27■□□□□ 0.2
CHFRQ96EP1 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC16.27■□□□□ 0.2
CHFRQ96EP1 AC233724.13-201ENST00000598383 410 ntBASIC16.27■□□□□ 0.2
CHFRQ96EP1 AC133552.6-201ENST00000613406 534 ntBASIC16.27■□□□□ 0.2
CHFRQ96EP1 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC16.27■□□□□ 0.2
CHFRQ96EP1 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC16.27■□□□□ 0.2
CHFRQ96EP1 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
CHFRQ96EP1 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CHFRQ96EP1 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
CHFRQ96EP1 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
CHFRQ96EP1 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CHFRQ96EP1 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
CHFRQ96EP1 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC16.27■□□□□ 0.19
CHFRQ96EP1 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CHFRQ96EP1 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC16.27■□□□□ 0.19
CHFRQ96EP1 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
CHFRQ96EP1 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.26■□□□□ 0.19
CHFRQ96EP1 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC16.26■□□□□ 0.19
CHFRQ96EP1 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
CHFRQ96EP1 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC16.26■□□□□ 0.19
CHFRQ96EP1 AC093525.8-201ENST00000624099 1342 ntBASIC16.26■□□□□ 0.19
CHFRQ96EP1 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CHFRQ96EP1 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC16.26■□□□□ 0.19
CHFRQ96EP1 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC16.26■□□□□ 0.19
CHFRQ96EP1 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CHFRQ96EP1 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CHFRQ96EP1 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CHFRQ96EP1 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
CHFRQ96EP1 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CHFRQ96EP1 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CHFRQ96EP1 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CHFRQ96EP1 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CHFRQ96EP1 RPL28-204ENST00000431533 590 ntTSL 2 BASIC16.26■□□□□ 0.19
CHFRQ96EP1 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC16.26■□□□□ 0.19
CHFRQ96EP1 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC16.26■□□□□ 0.19
CHFRQ96EP1 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC16.26■□□□□ 0.19
CHFRQ96EP1 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC16.26■□□□□ 0.19
CHFRQ96EP1 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC16.26■□□□□ 0.19
CHFRQ96EP1 RPL28-206ENST00000558752 671 ntTSL 3 BASIC16.26■□□□□ 0.19
CHFRQ96EP1 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC16.26■□□□□ 0.19
CHFRQ96EP1 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC16.26■□□□□ 0.19
CHFRQ96EP1 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC16.26■□□□□ 0.19
CHFRQ96EP1 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
CHFRQ96EP1 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC16.26■□□□□ 0.19
CHFRQ96EP1 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC16.26■□□□□ 0.19
CHFRQ96EP1 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.26■□□□□ 0.19
CHFRQ96EP1 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CHFRQ96EP1 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CHFRQ96EP1 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CHFRQ96EP1 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC16.26■□□□□ 0.19
CHFRQ96EP1 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CHFRQ96EP1 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CHFRQ96EP1 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
CHFRQ96EP1 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC16.26■□□□□ 0.19
CHFRQ96EP1 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.26■□□□□ 0.19
CHFRQ96EP1 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
CHFRQ96EP1 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CHFRQ96EP1 HNRNPA1P48-201ENST00000562726 1377 ntBASIC16.26■□□□□ 0.19
CHFRQ96EP1 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC16.26■□□□□ 0.19
CHFRQ96EP1 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.25■□□□□ 0.19
CHFRQ96EP1 PDIA3P1-201ENST00000471856 1510 ntBASIC16.25■□□□□ 0.19
CHFRQ96EP1 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC16.25■□□□□ 0.19
CHFRQ96EP1 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC16.25■□□□□ 0.19
CHFRQ96EP1 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CHFRQ96EP1 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CHFRQ96EP1 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.25■□□□□ 0.19
CHFRQ96EP1 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC16.25■□□□□ 0.19
CHFRQ96EP1 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CHFRQ96EP1 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC16.25■□□□□ 0.19
CHFRQ96EP1 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC16.25■□□□□ 0.19
CHFRQ96EP1 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CHFRQ96EP1 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CHFRQ96EP1 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
CHFRQ96EP1 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CHFRQ96EP1 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CHFRQ96EP1 MPV17-208ENST00000405076 603 ntTSL 5 BASIC16.25■□□□□ 0.19
CHFRQ96EP1 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CHFRQ96EP1 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC16.25■□□□□ 0.19
CHFRQ96EP1 FAM86LP-201ENST00000478302 853 ntBASIC16.25■□□□□ 0.19
CHFRQ96EP1 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC16.25■□□□□ 0.19
CHFRQ96EP1 AC104989.1-201ENST00000519711 778 ntBASIC16.25■□□□□ 0.19
CHFRQ96EP1 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC16.25■□□□□ 0.19
CHFRQ96EP1 SLC25A47P1-201ENST00000531577 414 ntBASIC16.25■□□□□ 0.19
CHFRQ96EP1 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
CHFRQ96EP1 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC16.25■□□□□ 0.19
CHFRQ96EP1 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC16.25■□□□□ 0.19
CHFRQ96EP1 AC124283.3-201ENST00000570869 594 ntBASIC16.25■□□□□ 0.19
CHFRQ96EP1 PIGL-212ENST00000581006 554 ntTSL 4 BASIC16.25■□□□□ 0.19
CHFRQ96EP1 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC16.25■□□□□ 0.19
CHFRQ96EP1 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC16.25■□□□□ 0.19
CHFRQ96EP1 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC16.25■□□□□ 0.19
CHFRQ96EP1 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
CHFRQ96EP1 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CHFRQ96EP1 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
CHFRQ96EP1 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CHFRQ96EP1 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CHFRQ96EP1 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CHFRQ96EP1 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms