Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHROOM1Q2M3G4 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC18.6■□□□□ 0.57
SHROOM1Q2M3G4 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHROOM1Q2M3G4 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHROOM1Q2M3G4 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
SHROOM1Q2M3G4 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHROOM1Q2M3G4 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHROOM1Q2M3G4 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHROOM1Q2M3G4 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHROOM1Q2M3G4 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHROOM1Q2M3G4 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC18.6■□□□□ 0.57
SHROOM1Q2M3G4 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC18.6■□□□□ 0.57
SHROOM1Q2M3G4 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SHROOM1Q2M3G4 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC18.6■□□□□ 0.57
SHROOM1Q2M3G4 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC18.6■□□□□ 0.57
SHROOM1Q2M3G4 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHROOM1Q2M3G4 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
SHROOM1Q2M3G4 MIR5189-201ENST00000577370 114 ntBASIC18.6■□□□□ 0.57
SHROOM1Q2M3G4 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
SHROOM1Q2M3G4 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC18.6■□□□□ 0.57
SHROOM1Q2M3G4 BRI3BPP1-201ENST00000594224 787 ntBASIC18.6■□□□□ 0.57
SHROOM1Q2M3G4 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SHROOM1Q2M3G4 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHROOM1Q2M3G4 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC18.6■□□□□ 0.57
SHROOM1Q2M3G4 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHROOM1Q2M3G4 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHROOM1Q2M3G4 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHROOM1Q2M3G4 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
SHROOM1Q2M3G4 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SHROOM1Q2M3G4 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
SHROOM1Q2M3G4 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHROOM1Q2M3G4 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC18.6■□□□□ 0.57
SHROOM1Q2M3G4 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHROOM1Q2M3G4 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 AC018665.1-201ENST00000622927 1362 ntBASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 AC136604.1-201ENST00000418535 575 ntBASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 USP40-206ENST00000443711 628 ntTSL 2 BASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 BNIP3P42-201ENST00000454982 569 ntBASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 BNIP3P29-201ENST00000598302 571 ntBASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 AC011447.5-201ENST00000616168 564 ntBASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 AL033527.4-201ENST00000641026 673 ntBASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHROOM1Q2M3G4 AP001282.1-201ENST00000531301 1499 ntBASIC18.58■□□□□ 0.57
SHROOM1Q2M3G4 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC18.58■□□□□ 0.57
SHROOM1Q2M3G4 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SHROOM1Q2M3G4 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC18.58■□□□□ 0.57
SHROOM1Q2M3G4 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
SHROOM1Q2M3G4 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC18.58■□□□□ 0.57
SHROOM1Q2M3G4 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
SHROOM1Q2M3G4 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SHROOM1Q2M3G4 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SHROOM1Q2M3G4 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.58■□□□□ 0.57
SHROOM1Q2M3G4 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SHROOM1Q2M3G4 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC18.58■□□□□ 0.57
SHROOM1Q2M3G4 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SHROOM1Q2M3G4 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SHROOM1Q2M3G4 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SHROOM1Q2M3G4 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SHROOM1Q2M3G4 NSL1-201ENST00000366976 722 ntTSL 2 BASIC18.58■□□□□ 0.56
SHROOM1Q2M3G4 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SHROOM1Q2M3G4 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SHROOM1Q2M3G4 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC18.58■□□□□ 0.56
SHROOM1Q2M3G4 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC18.58■□□□□ 0.56
SHROOM1Q2M3G4 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SHROOM1Q2M3G4 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC18.58■□□□□ 0.56
SHROOM1Q2M3G4 AC124283.3-201ENST00000570869 594 ntBASIC18.58■□□□□ 0.56
SHROOM1Q2M3G4 AL450472.2-201ENST00000603663 1156 ntBASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms