Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC17.01■□□□□ 0.31
LIG3P49916 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
LIG3P49916 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
LIG3P49916 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
LIG3P49916 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LIG3P49916 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC17.01■□□□□ 0.31
LIG3P49916 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LIG3P49916 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC17.01■□□□□ 0.31
LIG3P49916 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LIG3P49916 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LIG3P49916 R3HDM2P2-201ENST00000401880 2116 ntBASIC17■□□□□ 0.31
LIG3P49916 AC067930.6-201ENST00000623257 4947 ntBASIC17■□□□□ 0.31
LIG3P49916 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC17■□□□□ 0.31
LIG3P49916 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC17■□□□□ 0.31
LIG3P49916 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LIG3P49916 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LIG3P49916 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LIG3P49916 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LIG3P49916 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
LIG3P49916 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
LIG3P49916 DNAJB3-201ENST00000446806 729 ntBASIC17■□□□□ 0.31
LIG3P49916 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC17■□□□□ 0.31
LIG3P49916 AC107918.2-201ENST00000530817 355 ntBASIC17■□□□□ 0.31
LIG3P49916 KRT19P2-202ENST00000557173 1012 ntBASIC17■□□□□ 0.31
LIG3P49916 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC17■□□□□ 0.31
LIG3P49916 AC006538.1-201ENST00000567905 1585 ntBASIC17■□□□□ 0.31
LIG3P49916 MTDHP5-201ENST00000598980 586 ntBASIC17■□□□□ 0.31
LIG3P49916 AC023141.13-201ENST00000604991 943 ntBASIC17■□□□□ 0.31
LIG3P49916 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC17■□□□□ 0.31
LIG3P49916 AC006538.3-201ENST00000612495 578 ntBASIC17■□□□□ 0.31
LIG3P49916 AC025580.3-201ENST00000617932 1424 ntBASIC17■□□□□ 0.31
LIG3P49916 AC007064.4-201ENST00000637740 555 ntBASIC17■□□□□ 0.31
LIG3P49916 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
LIG3P49916 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17■□□□□ 0.31
LIG3P49916 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LIG3P49916 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LIG3P49916 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC17■□□□□ 0.31
LIG3P49916 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
LIG3P49916 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LIG3P49916 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LIG3P49916 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LIG3P49916 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LIG3P49916 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
LIG3P49916 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LIG3P49916 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC16.99■□□□□ 0.31
LIG3P49916 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
LIG3P49916 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC16.99■□□□□ 0.31
LIG3P49916 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.99■□□□□ 0.31
LIG3P49916 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.99■□□□□ 0.31
LIG3P49916 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.99■□□□□ 0.31
LIG3P49916 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC16.99■□□□□ 0.31
LIG3P49916 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
LIG3P49916 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC16.99■□□□□ 0.31
LIG3P49916 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIG3P49916 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIG3P49916 AL603832.2-201ENST00000566195 2125 ntBASIC16.99■□□□□ 0.31
LIG3P49916 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIG3P49916 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
LIG3P49916 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIG3P49916 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIG3P49916 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIG3P49916 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
LIG3P49916 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
LIG3P49916 AL513480.1-201ENST00000451731 511 ntBASIC16.99■□□□□ 0.31
LIG3P49916 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIG3P49916 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC16.99■□□□□ 0.31
LIG3P49916 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIG3P49916 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC16.99■□□□□ 0.31
LIG3P49916 GPALPP1-207ENST00000611650 899 ntBASIC16.99■□□□□ 0.31
LIG3P49916 HOTTIP_1.1-201ENST00000620415 57 ntBASIC16.99■□□□□ 0.31
LIG3P49916 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.99■□□□□ 0.31
LIG3P49916 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
LIG3P49916 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.99■□□□□ 0.31
LIG3P49916 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIG3P49916 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
LIG3P49916 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.99■□□□□ 0.31
LIG3P49916 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
LIG3P49916 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIG3P49916 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
LIG3P49916 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIG3P49916 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
LIG3P49916 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
LIG3P49916 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIG3P49916 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIG3P49916 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
LIG3P49916 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
LIG3P49916 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC16.98■□□□□ 0.31
LIG3P49916 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
LIG3P49916 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LIG3P49916 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
LIG3P49916 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC16.98■□□□□ 0.31
LIG3P49916 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
LIG3P49916 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LIG3P49916 FLJ16779-201ENST00000612722 7638 ntBASIC16.98■□□□□ 0.31
LIG3P49916 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
LIG3P49916 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.98■□□□□ 0.31
LIG3P49916 FRMD8P1-201ENST00000440433 1524 ntBASIC16.98■□□□□ 0.31
LIG3P49916 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.98■□□□□ 0.31
LIG3P49916 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
LIG3P49916 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms