Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC18.52■□□□□ 0.56
CTCFP49711 AC093433.1-201ENST00000458048 571 ntBASIC18.52■□□□□ 0.56
CTCFP49711 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC18.52■□□□□ 0.56
CTCFP49711 GNRHR2-203ENST00000581100 1187 ntBASIC18.52■□□□□ 0.56
CTCFP49711 AC005357.2-202ENST00000590507 1060 ntBASIC18.52■□□□□ 0.56
CTCFP49711 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC18.52■□□□□ 0.56
CTCFP49711 RN7SL736P-201ENST00000613111 269 ntBASIC18.52■□□□□ 0.56
CTCFP49711 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC18.52■□□□□ 0.56
CTCFP49711 LINC01451-201ENST00000623792 534 ntBASIC18.52■□□□□ 0.56
CTCFP49711 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CTCFP49711 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
CTCFP49711 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CTCFP49711 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC18.52■□□□□ 0.56
CTCFP49711 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
CTCFP49711 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CTCFP49711 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CTCFP49711 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
CTCFP49711 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC18.52■□□□□ 0.55
CTCFP49711 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CTCFP49711 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
CTCFP49711 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CTCFP49711 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC18.51■□□□□ 0.55
CTCFP49711 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CTCFP49711 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC18.51■□□□□ 0.55
CTCFP49711 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
CTCFP49711 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC18.51■□□□□ 0.55
CTCFP49711 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CTCFP49711 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CTCFP49711 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CTCFP49711 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CTCFP49711 AC008894.3-201ENST00000624324 3103 ntBASIC18.51■□□□□ 0.55
CTCFP49711 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CTCFP49711 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CTCFP49711 C1QBPP1-201ENST00000400117 770 ntBASIC18.51■□□□□ 0.55
CTCFP49711 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CTCFP49711 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC18.51■□□□□ 0.55
CTCFP49711 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC18.51■□□□□ 0.55
CTCFP49711 AC126915.1-201ENST00000522847 1038 ntBASIC18.51■□□□□ 0.55
CTCFP49711 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC18.51■□□□□ 0.55
CTCFP49711 CFL1-214ENST00000534769 758 ntTSL 2 BASIC18.51■□□□□ 0.55
CTCFP49711 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
CTCFP49711 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC18.51■□□□□ 0.55
CTCFP49711 METTL26-214ENST00000614890 801 ntTSL 3 BASIC18.51■□□□□ 0.55
CTCFP49711 AL096828.3-201ENST00000615354 462 ntBASIC18.51■□□□□ 0.55
CTCFP49711 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CTCFP49711 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CTCFP49711 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CTCFP49711 AL021920.2-201ENST00000624828 1351 ntBASIC18.51■□□□□ 0.55
CTCFP49711 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC18.51■□□□□ 0.55
CTCFP49711 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC18.51■□□□□ 0.55
CTCFP49711 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CTCFP49711 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC18.51■□□□□ 0.55
CTCFP49711 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CTCFP49711 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CTCFP49711 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CTCFP49711 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CTCFP49711 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
CTCFP49711 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CTCFP49711 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
CTCFP49711 PCDHA12-202ENST00000613593 2588 ntBASIC18.5■□□□□ 0.55
CTCFP49711 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CTCFP49711 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
CTCFP49711 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CTCFP49711 AC084018.2-201ENST00000613093 2607 ntBASIC18.5■□□□□ 0.55
CTCFP49711 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CTCFP49711 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CTCFP49711 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CTCFP49711 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CTCFP49711 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC18.5■□□□□ 0.55
CTCFP49711 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC18.5■□□□□ 0.55
CTCFP49711 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC18.5■□□□□ 0.55
CTCFP49711 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC18.5■□□□□ 0.55
CTCFP49711 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CTCFP49711 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC18.5■□□□□ 0.55
CTCFP49711 AC011491.1-203ENST00000637688 543 ntBASIC18.5■□□□□ 0.55
CTCFP49711 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
CTCFP49711 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CTCFP49711 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CTCFP49711 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CTCFP49711 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CTCFP49711 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CTCFP49711 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CTCFP49711 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CTCFP49711 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC18.5■□□□□ 0.55
CTCFP49711 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CTCFP49711 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC18.5■□□□□ 0.55
CTCFP49711 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CTCFP49711 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC18.5■□□□□ 0.55
CTCFP49711 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CTCFP49711 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CTCFP49711 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
CTCFP49711 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CTCFP49711 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC18.49■□□□□ 0.55
CTCFP49711 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
CTCFP49711 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CTCFP49711 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CTCFP49711 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.49■□□□□ 0.55
CTCFP49711 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
CTCFP49711 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CTCFP49711 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms