Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
SOX2P48431 GSN-206ENST00000394353 2311 ntTSL 2 BASIC14.23□□□□□ -0.13
SOX2P48431 KCP-203ENST00000610776 5108 ntTSL 5 BASIC14.23□□□□□ -0.13
SOX2P48431 AKR1C7P-201ENST00000305623 895 ntBASIC14.23□□□□□ -0.13
SOX2P48431 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SOX2P48431 AC073621.1-201ENST00000392730 636 ntBASIC14.23□□□□□ -0.13
SOX2P48431 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC14.23□□□□□ -0.13
SOX2P48431 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
SOX2P48431 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC14.23□□□□□ -0.13
SOX2P48431 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC14.23□□□□□ -0.13
SOX2P48431 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
SOX2P48431 MTRF1LP2-201ENST00000506027 1122 ntBASIC14.23□□□□□ -0.13
SOX2P48431 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC14.23□□□□□ -0.13
SOX2P48431 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC14.23□□□□□ -0.13
SOX2P48431 AC008667.4-201ENST00000607370 168 ntBASIC14.23□□□□□ -0.13
SOX2P48431 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC14.23□□□□□ -0.13
SOX2P48431 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SOX2P48431 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC14.23□□□□□ -0.13
SOX2P48431 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SOX2P48431 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
SOX2P48431 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
SOX2P48431 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SOX2P48431 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SOX2P48431 AC006058.4-201ENST00000624016 1670 ntBASIC14.23□□□□□ -0.13
SOX2P48431 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SOX2P48431 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SOX2P48431 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC14.23□□□□□ -0.13
SOX2P48431 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC14.23□□□□□ -0.13
SOX2P48431 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC14.23□□□□□ -0.13
SOX2P48431 AC020658.6-201ENST00000623564 1870 ntBASIC14.23□□□□□ -0.13
SOX2P48431 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC14.23□□□□□ -0.13
SOX2P48431 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SOX2P48431 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
SOX2P48431 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
SOX2P48431 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
SOX2P48431 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC14.22□□□□□ -0.13
SOX2P48431 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX2P48431 AC008677.1-201ENST00000519230 1561 ntBASIC14.22□□□□□ -0.13
SOX2P48431 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX2P48431 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC14.22□□□□□ -0.13
SOX2P48431 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
SOX2P48431 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC14.22□□□□□ -0.13
SOX2P48431 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX2P48431 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC14.22□□□□□ -0.13
SOX2P48431 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC14.22□□□□□ -0.13
SOX2P48431 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX2P48431 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX2P48431 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX2P48431 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC14.22□□□□□ -0.13
SOX2P48431 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX2P48431 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX2P48431 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SOX2P48431 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SOX2P48431 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC14.22□□□□□ -0.13
SOX2P48431 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
SOX2P48431 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX2P48431 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
SOX2P48431 CD99-202ENST00000381180 530 ntTSL 2 BASIC14.22□□□□□ -0.13
SOX2P48431 TSPY19P-201ENST00000418461 509 ntBASIC14.22□□□□□ -0.13
SOX2P48431 KRT18P27-201ENST00000427733 1299 ntBASIC14.22□□□□□ -0.13
SOX2P48431 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC14.22□□□□□ -0.13
SOX2P48431 TSPY18P-201ENST00000441642 509 ntBASIC14.22□□□□□ -0.13
SOX2P48431 HCG4P8-203ENST00000443049 980 ntBASIC14.22□□□□□ -0.13
SOX2P48431 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC14.22□□□□□ -0.13
SOX2P48431 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX2P48431 RNF146-204ENST00000476956 884 ntTSL 2 BASIC14.22□□□□□ -0.13
SOX2P48431 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
SOX2P48431 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX2P48431 OR7E14P-202ENST00000530490 1290 ntBASIC14.22□□□□□ -0.13
SOX2P48431 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SOX2P48431 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX2P48431 RIN3-211ENST00000557762 517 ntTSL 3 BASIC14.22□□□□□ -0.13
SOX2P48431 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SOX2P48431 METTL23-204ENST00000586752 904 ntTSL 2 BASIC14.22□□□□□ -0.13
SOX2P48431 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SOX2P48431 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC14.22□□□□□ -0.13
SOX2P48431 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC14.22□□□□□ -0.13
SOX2P48431 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC14.22□□□□□ -0.13
SOX2P48431 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX2P48431 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX2P48431 TPO-203ENST00000346956 2923 ntTSL 5 BASIC14.22□□□□□ -0.13
SOX2P48431 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
SOX2P48431 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SOX2P48431 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC14.22□□□□□ -0.13
SOX2P48431 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX2P48431 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC14.22□□□□□ -0.13
SOX2P48431 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC14.22□□□□□ -0.13
SOX2P48431 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SOX2P48431 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
SOX2P48431 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SOX2P48431 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX2P48431 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC14.22□□□□□ -0.13
SOX2P48431 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
SOX2P48431 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
SOX2P48431 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
SOX2P48431 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
SOX2P48431 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
SOX2P48431 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
SOX2P48431 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
SOX2P48431 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms