Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
BDNFP23560 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
BDNFP23560 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
BDNFP23560 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
BDNFP23560 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC16.92■□□□□ 0.3
BDNFP23560 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
BDNFP23560 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
BDNFP23560 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
BDNFP23560 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
BDNFP23560 AP001282.1-201ENST00000531301 1499 ntBASIC16.92■□□□□ 0.3
BDNFP23560 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
BDNFP23560 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC16.92■□□□□ 0.3
BDNFP23560 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
BDNFP23560 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
BDNFP23560 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC16.92■□□□□ 0.3
BDNFP23560 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.92■□□□□ 0.3
BDNFP23560 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
BDNFP23560 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
BDNFP23560 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
BDNFP23560 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
BDNFP23560 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC16.91■□□□□ 0.3
BDNFP23560 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
BDNFP23560 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC16.91■□□□□ 0.3
BDNFP23560 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
BDNFP23560 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
BDNFP23560 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
BDNFP23560 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
BDNFP23560 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
BDNFP23560 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
BDNFP23560 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
BDNFP23560 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC16.91■□□□□ 0.3
BDNFP23560 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
BDNFP23560 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
BDNFP23560 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
BDNFP23560 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
BDNFP23560 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
BDNFP23560 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
BDNFP23560 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
BDNFP23560 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
BDNFP23560 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
BDNFP23560 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
BDNFP23560 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC16.91■□□□□ 0.3
BDNFP23560 AC114501.2-201ENST00000439631 535 ntBASIC16.91■□□□□ 0.3
BDNFP23560 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC16.91■□□□□ 0.3
BDNFP23560 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC16.91■□□□□ 0.3
BDNFP23560 GNAQP1-201ENST00000444815 1067 ntBASIC16.91■□□□□ 0.3
BDNFP23560 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC16.91■□□□□ 0.3
BDNFP23560 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
BDNFP23560 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
BDNFP23560 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC16.91■□□□□ 0.3
BDNFP23560 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC16.91■□□□□ 0.3
BDNFP23560 AC004461.2-201ENST00000629517 803 ntBASIC16.91■□□□□ 0.3
BDNFP23560 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
BDNFP23560 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC16.91■□□□□ 0.3
BDNFP23560 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC16.91■□□□□ 0.3
BDNFP23560 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
BDNFP23560 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
BDNFP23560 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
BDNFP23560 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
BDNFP23560 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC16.91■□□□□ 0.3
BDNFP23560 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
BDNFP23560 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
BDNFP23560 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
BDNFP23560 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC16.9■□□□□ 0.3
BDNFP23560 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
BDNFP23560 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC16.9■□□□□ 0.3
BDNFP23560 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
BDNFP23560 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
BDNFP23560 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC16.9■□□□□ 0.3
BDNFP23560 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
BDNFP23560 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
BDNFP23560 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
BDNFP23560 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
BDNFP23560 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
BDNFP23560 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
BDNFP23560 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
BDNFP23560 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
BDNFP23560 MTHFR-217ENST00000641820 1569 ntBASIC16.9■□□□□ 0.3
BDNFP23560 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
BDNFP23560 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
BDNFP23560 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
BDNFP23560 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC16.9■□□□□ 0.3
BDNFP23560 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC16.9■□□□□ 0.3
BDNFP23560 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
BDNFP23560 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
BDNFP23560 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
BDNFP23560 MIR648-201ENST00000385046 94 ntBASIC16.9■□□□□ 0.3
BDNFP23560 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
BDNFP23560 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
BDNFP23560 RASL12-203ENST00000434605 982 ntTSL 2 BASIC16.9■□□□□ 0.3
BDNFP23560 EEF1DP4-201ENST00000446006 880 ntBASIC16.9■□□□□ 0.3
BDNFP23560 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC16.9■□□□□ 0.3
BDNFP23560 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
BDNFP23560 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
BDNFP23560 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
BDNFP23560 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC16.9■□□□□ 0.3
BDNFP23560 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.9■□□□□ 0.3
BDNFP23560 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC16.9■□□□□ 0.3
BDNFP23560 AC025048.3-201ENST00000590609 569 ntBASIC16.9■□□□□ 0.3
BDNFP23560 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms