Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL6A1P12109 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL6A1P12109 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL6A1P12109 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL6A1P12109 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL6A1P12109 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
COL6A1P12109 AC060834.1-201ENST00000443027 2032 ntBASIC17.57■□□□□ 0.4
COL6A1P12109 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
COL6A1P12109 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL6A1P12109 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC17.57■□□□□ 0.4
COL6A1P12109 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL6A1P12109 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC17.57■□□□□ 0.4
COL6A1P12109 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL6A1P12109 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC17.57■□□□□ 0.4
COL6A1P12109 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL6A1P12109 HIST2H2BC-201ENST00000498492 580 ntBASIC17.57■□□□□ 0.4
COL6A1P12109 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC17.57■□□□□ 0.4
COL6A1P12109 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC17.57■□□□□ 0.4
COL6A1P12109 MIR3619-201ENST00000579667 83 ntBASIC17.57■□□□□ 0.4
COL6A1P12109 MIR4706-201ENST00000582134 82 ntBASIC17.57■□□□□ 0.4
COL6A1P12109 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
COL6A1P12109 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC17.57■□□□□ 0.4
COL6A1P12109 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
COL6A1P12109 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL6A1P12109 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC17.57■□□□□ 0.4
COL6A1P12109 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
COL6A1P12109 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
COL6A1P12109 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
COL6A1P12109 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL6A1P12109 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.57■□□□□ 0.4
COL6A1P12109 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC17.57■□□□□ 0.4
COL6A1P12109 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL6A1P12109 AC106820.2-201ENST00000563775 3264 ntBASIC17.57■□□□□ 0.4
COL6A1P12109 KRT8P19-201ENST00000551916 1455 ntBASIC17.56■□□□□ 0.4
COL6A1P12109 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A1P12109 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A1P12109 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC17.56■□□□□ 0.4
COL6A1P12109 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
COL6A1P12109 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A1P12109 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
COL6A1P12109 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
COL6A1P12109 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
COL6A1P12109 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
COL6A1P12109 TEX30-203ENST00000376022 828 ntTSL 2 BASIC17.56■□□□□ 0.4
COL6A1P12109 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
COL6A1P12109 HINT2P1-201ENST00000419438 481 ntBASIC17.56■□□□□ 0.4
COL6A1P12109 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC17.56■□□□□ 0.4
COL6A1P12109 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A1P12109 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC17.56■□□□□ 0.4
COL6A1P12109 AC078819.1-201ENST00000547454 765 ntBASIC17.56■□□□□ 0.4
COL6A1P12109 AC012085.1-201ENST00000548270 765 ntBASIC17.56■□□□□ 0.4
COL6A1P12109 AC243562.2-201ENST00000561247 970 ntBASIC17.56■□□□□ 0.4
COL6A1P12109 HNRNPA1P48-202ENST00000565308 961 ntBASIC17.56■□□□□ 0.4
COL6A1P12109 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC17.56■□□□□ 0.4
COL6A1P12109 AC000095.1-201ENST00000603208 874 ntBASIC17.56■□□□□ 0.4
COL6A1P12109 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC17.56■□□□□ 0.4
COL6A1P12109 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A1P12109 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A1P12109 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A1P12109 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC17.56■□□□□ 0.4
COL6A1P12109 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A1P12109 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
COL6A1P12109 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.56■□□□□ 0.4
COL6A1P12109 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A1P12109 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC17.56■□□□□ 0.4
COL6A1P12109 AL603756.1-201ENST00000606511 2163 ntBASIC17.56■□□□□ 0.4
COL6A1P12109 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A1P12109 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A1P12109 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL6A1P12109 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
COL6A1P12109 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL6A1P12109 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC17.55■□□□□ 0.4
COL6A1P12109 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.55■□□□□ 0.4
COL6A1P12109 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL6A1P12109 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.55■□□□□ 0.4
COL6A1P12109 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.55■□□□□ 0.4
COL6A1P12109 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL6A1P12109 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL6A1P12109 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL6A1P12109 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL6A1P12109 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
COL6A1P12109 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL6A1P12109 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC17.55■□□□□ 0.4
COL6A1P12109 FAM197Y7-201ENST00000432892 766 ntBASIC17.55■□□□□ 0.4
COL6A1P12109 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC17.55■□□□□ 0.4
COL6A1P12109 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC17.55■□□□□ 0.4
COL6A1P12109 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC17.55■□□□□ 0.4
COL6A1P12109 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC17.55■□□□□ 0.4
COL6A1P12109 RPSAP36-202ENST00000494591 1261 ntBASIC17.55■□□□□ 0.4
COL6A1P12109 SLED1-202ENST00000512051 380 ntBASIC17.55■□□□□ 0.4
COL6A1P12109 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
COL6A1P12109 ACR-203ENST00000529621 708 ntTSL 5 BASIC17.55■□□□□ 0.4
COL6A1P12109 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL6A1P12109 CHMP4BP1-201ENST00000556017 588 ntBASIC17.55■□□□□ 0.4
COL6A1P12109 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC17.55■□□□□ 0.4
COL6A1P12109 MIR4741-201ENST00000579822 90 ntBASIC17.55■□□□□ 0.4
COL6A1P12109 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
COL6A1P12109 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC17.55■□□□□ 0.4
COL6A1P12109 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL6A1P12109 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms