Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
HLA-DOAP06340 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HLA-DOAP06340 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HLA-DOAP06340 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
HLA-DOAP06340 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
HLA-DOAP06340 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
HLA-DOAP06340 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC18.85■□□□□ 0.61
HLA-DOAP06340 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HLA-DOAP06340 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HLA-DOAP06340 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HLA-DOAP06340 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HLA-DOAP06340 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
HLA-DOAP06340 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC18.85■□□□□ 0.61
HLA-DOAP06340 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC18.85■□□□□ 0.61
HLA-DOAP06340 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC18.85■□□□□ 0.61
HLA-DOAP06340 RN7SL837P-201ENST00000463010 287 ntBASIC18.85■□□□□ 0.61
HLA-DOAP06340 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC18.85■□□□□ 0.61
HLA-DOAP06340 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC18.85■□□□□ 0.61
HLA-DOAP06340 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HLA-DOAP06340 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC18.85■□□□□ 0.61
HLA-DOAP06340 AL450472.2-201ENST00000603663 1156 ntBASIC18.85■□□□□ 0.61
HLA-DOAP06340 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC18.85■□□□□ 0.61
HLA-DOAP06340 AL158212.4-201ENST00000624062 1286 ntBASIC18.85■□□□□ 0.61
HLA-DOAP06340 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HLA-DOAP06340 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
HLA-DOAP06340 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
HLA-DOAP06340 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HLA-DOAP06340 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC18.85■□□□□ 0.61
HLA-DOAP06340 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC18.85■□□□□ 0.61
HLA-DOAP06340 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
HLA-DOAP06340 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HLA-DOAP06340 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC18.85■□□□□ 0.61
HLA-DOAP06340 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
HLA-DOAP06340 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
HLA-DOAP06340 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HLA-DOAP06340 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC18.84■□□□□ 0.61
HLA-DOAP06340 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
HLA-DOAP06340 REXO1L1P-202ENST00000608646 1974 ntBASIC18.84■□□□□ 0.61
HLA-DOAP06340 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HLA-DOAP06340 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HLA-DOAP06340 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
HLA-DOAP06340 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HLA-DOAP06340 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
HLA-DOAP06340 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HLA-DOAP06340 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HLA-DOAP06340 PKIG-203ENST00000372887 769 ntTSL 3 BASIC18.84■□□□□ 0.61
HLA-DOAP06340 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
HLA-DOAP06340 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HLA-DOAP06340 AC074338.1-201ENST00000416825 156 ntBASIC18.84■□□□□ 0.61
HLA-DOAP06340 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC18.84■□□□□ 0.61
HLA-DOAP06340 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC18.84■□□□□ 0.61
HLA-DOAP06340 RN7SL399P-201ENST00000471648 279 ntBASIC18.84■□□□□ 0.61
HLA-DOAP06340 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC18.84■□□□□ 0.61
HLA-DOAP06340 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC18.84■□□□□ 0.61
HLA-DOAP06340 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC18.84■□□□□ 0.61
HLA-DOAP06340 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC18.84■□□□□ 0.61
HLA-DOAP06340 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC18.84■□□□□ 0.61
HLA-DOAP06340 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC18.84■□□□□ 0.61
HLA-DOAP06340 WFDC1-204ENST00000613603 549 ntBASIC18.84■□□□□ 0.61
HLA-DOAP06340 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HLA-DOAP06340 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
HLA-DOAP06340 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HLA-DOAP06340 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HLA-DOAP06340 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
HLA-DOAP06340 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
HLA-DOAP06340 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC18.83■□□□□ 0.61
HLA-DOAP06340 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
HLA-DOAP06340 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.83■□□□□ 0.61
HLA-DOAP06340 NSL1-201ENST00000366976 722 ntTSL 2 BASIC18.83■□□□□ 0.6
HLA-DOAP06340 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
HLA-DOAP06340 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HLA-DOAP06340 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC18.83■□□□□ 0.6
HLA-DOAP06340 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC18.83■□□□□ 0.6
HLA-DOAP06340 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC18.83■□□□□ 0.6
HLA-DOAP06340 NME4-207ENST00000450036 985 ntTSL 3 BASIC18.83■□□□□ 0.6
HLA-DOAP06340 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC18.83■□□□□ 0.6
HLA-DOAP06340 NOP2-220ENST00000545915 630 ntTSL 2 BASIC18.83■□□□□ 0.6
HLA-DOAP06340 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC18.83■□□□□ 0.6
HLA-DOAP06340 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC18.83■□□□□ 0.6
HLA-DOAP06340 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC18.83■□□□□ 0.6
HLA-DOAP06340 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC18.83■□□□□ 0.6
HLA-DOAP06340 AL359881.2-201ENST00000602973 570 ntBASIC18.83■□□□□ 0.6
HLA-DOAP06340 AL008721.1-201ENST00000609964 604 ntBASIC18.83■□□□□ 0.6
HLA-DOAP06340 MIR8072-201ENST00000614241 80 ntBASIC18.83■□□□□ 0.6
HLA-DOAP06340 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HLA-DOAP06340 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC18.83■□□□□ 0.6
HLA-DOAP06340 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HLA-DOAP06340 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC18.83■□□□□ 0.6
HLA-DOAP06340 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HLA-DOAP06340 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HLA-DOAP06340 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
HLA-DOAP06340 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
HLA-DOAP06340 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
HLA-DOAP06340 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC18.83■□□□□ 0.6
HLA-DOAP06340 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
HLA-DOAP06340 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
HLA-DOAP06340 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
HLA-DOAP06340 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC18.82■□□□□ 0.6
HLA-DOAP06340 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC18.82■□□□□ 0.6
HLA-DOAP06340 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms