Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHRNA1P02708 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
CHRNA1P02708 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHRNA1P02708 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CHRNA1P02708 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CHRNA1P02708 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC17.35■□□□□ 0.37
CHRNA1P02708 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
CHRNA1P02708 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
CHRNA1P02708 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.35■□□□□ 0.37
CHRNA1P02708 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHRNA1P02708 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CHRNA1P02708 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC17.35■□□□□ 0.37
CHRNA1P02708 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHRNA1P02708 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CHRNA1P02708 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CHRNA1P02708 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHRNA1P02708 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
CHRNA1P02708 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHRNA1P02708 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHRNA1P02708 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHRNA1P02708 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHRNA1P02708 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHRNA1P02708 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHRNA1P02708 LBX2-201ENST00000341396 886 ntTSL 3 BASIC17.34■□□□□ 0.37
CHRNA1P02708 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
CHRNA1P02708 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CHRNA1P02708 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC17.34■□□□□ 0.37
CHRNA1P02708 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CHRNA1P02708 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHRNA1P02708 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CHRNA1P02708 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC17.34■□□□□ 0.37
CHRNA1P02708 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC17.34■□□□□ 0.37
CHRNA1P02708 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CHRNA1P02708 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC17.34■□□□□ 0.37
CHRNA1P02708 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CHRNA1P02708 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC17.34■□□□□ 0.37
CHRNA1P02708 CTBP2P5-201ENST00000454986 1264 ntBASIC17.34■□□□□ 0.37
CHRNA1P02708 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
CHRNA1P02708 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CHRNA1P02708 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.34■□□□□ 0.37
CHRNA1P02708 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC17.34■□□□□ 0.37
CHRNA1P02708 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC17.34■□□□□ 0.37
CHRNA1P02708 MFF-223ENST00000524634 647 ntTSL 2 BASIC17.34■□□□□ 0.37
CHRNA1P02708 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC17.34■□□□□ 0.37
CHRNA1P02708 ENPP7P5-201ENST00000541031 1031 ntBASIC17.34■□□□□ 0.37
CHRNA1P02708 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC17.34■□□□□ 0.37
CHRNA1P02708 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC17.34■□□□□ 0.37
CHRNA1P02708 INTS4P2-202ENST00000614726 2019 ntBASIC17.34■□□□□ 0.37
CHRNA1P02708 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
CHRNA1P02708 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC17.34■□□□□ 0.37
CHRNA1P02708 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.34■□□□□ 0.37
CHRNA1P02708 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
CHRNA1P02708 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.37
CHRNA1P02708 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CHRNA1P02708 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CHRNA1P02708 AL607033.1-201ENST00000623900 1599 ntBASIC17.33■□□□□ 0.37
CHRNA1P02708 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CHRNA1P02708 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
CHRNA1P02708 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CHRNA1P02708 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC17.33■□□□□ 0.36
CHRNA1P02708 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.33■□□□□ 0.36
CHRNA1P02708 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
CHRNA1P02708 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHRNA1P02708 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
CHRNA1P02708 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHRNA1P02708 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHRNA1P02708 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
CHRNA1P02708 MGST3-203ENST00000367885 680 ntTSL 2 BASIC17.33■□□□□ 0.36
CHRNA1P02708 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CHRNA1P02708 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CHRNA1P02708 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHRNA1P02708 BCRP2-202ENST00000447763 634 ntBASIC17.33■□□□□ 0.36
CHRNA1P02708 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC17.33■□□□□ 0.36
CHRNA1P02708 BCRP6-201ENST00000510112 632 ntBASIC17.33■□□□□ 0.36
CHRNA1P02708 BCRP7-201ENST00000511549 544 ntBASIC17.33■□□□□ 0.36
CHRNA1P02708 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC17.33■□□□□ 0.36
CHRNA1P02708 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC17.33■□□□□ 0.36
CHRNA1P02708 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC17.33■□□□□ 0.36
CHRNA1P02708 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC17.33■□□□□ 0.36
CHRNA1P02708 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC17.33■□□□□ 0.36
CHRNA1P02708 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC17.33■□□□□ 0.36
CHRNA1P02708 AL049840.4-201ENST00000602422 811 ntBASIC17.33■□□□□ 0.36
CHRNA1P02708 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CHRNA1P02708 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
CHRNA1P02708 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CHRNA1P02708 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHRNA1P02708 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
CHRNA1P02708 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CHRNA1P02708 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CHRNA1P02708 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC17.33■□□□□ 0.36
CHRNA1P02708 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC17.33■□□□□ 0.36
CHRNA1P02708 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
CHRNA1P02708 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CHRNA1P02708 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CHRNA1P02708 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.33■□□□□ 0.36
CHRNA1P02708 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHRNA1P02708 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHRNA1P02708 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.32■□□□□ 0.36
CHRNA1P02708 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC17.32■□□□□ 0.36
CHRNA1P02708 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms