Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC22.13■■□□□ 1.13
NPHP4O75161 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
NPHP4O75161 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC22.13■■□□□ 1.13
NPHP4O75161 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC22.13■■□□□ 1.13
NPHP4O75161 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
NPHP4O75161 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
NPHP4O75161 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
NPHP4O75161 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC22.13■■□□□ 1.13
NPHP4O75161 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC22.13■■□□□ 1.13
NPHP4O75161 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC22.13■■□□□ 1.13
NPHP4O75161 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC22.13■■□□□ 1.13
NPHP4O75161 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
NPHP4O75161 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC22.13■■□□□ 1.13
NPHP4O75161 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC22.13■■□□□ 1.13
NPHP4O75161 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC22.13■■□□□ 1.13
NPHP4O75161 AC005740.2-201ENST00000511085 419 ntBASIC22.13■■□□□ 1.13
NPHP4O75161 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC22.13■■□□□ 1.13
NPHP4O75161 PGAM1P5-201ENST00000548011 764 ntBASIC22.13■■□□□ 1.13
NPHP4O75161 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC22.13■■□□□ 1.13
NPHP4O75161 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
NPHP4O75161 AC073413.1-201ENST00000603927 732 ntBASIC22.13■■□□□ 1.13
NPHP4O75161 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC22.13■■□□□ 1.13
NPHP4O75161 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
NPHP4O75161 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
NPHP4O75161 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
NPHP4O75161 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
NPHP4O75161 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC22.12■■□□□ 1.13
NPHP4O75161 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC22.12■■□□□ 1.13
NPHP4O75161 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
NPHP4O75161 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
NPHP4O75161 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
NPHP4O75161 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC22.12■■□□□ 1.13
NPHP4O75161 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
NPHP4O75161 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
NPHP4O75161 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC22.12■■□□□ 1.13
NPHP4O75161 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC22.12■■□□□ 1.13
NPHP4O75161 AC012618.1-201ENST00000461223 412 ntBASIC22.12■■□□□ 1.13
NPHP4O75161 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
NPHP4O75161 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC22.12■■□□□ 1.13
NPHP4O75161 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC22.12■■□□□ 1.13
NPHP4O75161 CFL1-206ENST00000527344 962 ntTSL 2 BASIC22.12■■□□□ 1.13
NPHP4O75161 AP003171.2-201ENST00000528208 925 ntBASIC22.12■■□□□ 1.13
NPHP4O75161 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC22.12■■□□□ 1.13
NPHP4O75161 MIR6756-201ENST00000616240 63 ntBASIC22.12■■□□□ 1.13
NPHP4O75161 ENPP7P14-201ENST00000621765 1040 ntBASIC22.12■■□□□ 1.13
NPHP4O75161 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC22.12■■□□□ 1.13
NPHP4O75161 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
NPHP4O75161 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
NPHP4O75161 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
NPHP4O75161 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
NPHP4O75161 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC22.11■■□□□ 1.13
NPHP4O75161 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
NPHP4O75161 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
NPHP4O75161 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
NPHP4O75161 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
NPHP4O75161 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC22.11■■□□□ 1.13
NPHP4O75161 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
NPHP4O75161 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
NPHP4O75161 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC22.11■■□□□ 1.13
NPHP4O75161 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
NPHP4O75161 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
NPHP4O75161 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
NPHP4O75161 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
NPHP4O75161 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC22.11■■□□□ 1.13
NPHP4O75161 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
NPHP4O75161 AC098935.1-201ENST00000446057 611 ntBASIC22.11■■□□□ 1.13
NPHP4O75161 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
NPHP4O75161 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC22.11■■□□□ 1.13
NPHP4O75161 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC22.11■■□□□ 1.13
NPHP4O75161 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC22.11■■□□□ 1.13
NPHP4O75161 AP001002.3-201ENST00000623482 206 ntBASIC22.11■■□□□ 1.13
NPHP4O75161 AC148477.4-201ENST00000613430 1793 ntBASIC22.11■■□□□ 1.13
NPHP4O75161 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC22.11■■□□□ 1.13
NPHP4O75161 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
NPHP4O75161 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
NPHP4O75161 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC22.11■■□□□ 1.13
NPHP4O75161 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
NPHP4O75161 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC22.11■■□□□ 1.13
NPHP4O75161 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
NPHP4O75161 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC22.11■■□□□ 1.13
NPHP4O75161 PCDHB18P-201ENST00000524813 2368 ntBASIC22.1■■□□□ 1.13
NPHP4O75161 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
NPHP4O75161 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
NPHP4O75161 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
NPHP4O75161 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC22.1■■□□□ 1.13
NPHP4O75161 DPM3-202ENST00000368399 517 ntBASIC22.1■■□□□ 1.13
NPHP4O75161 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
NPHP4O75161 FAM8A4P-201ENST00000435433 1213 ntBASIC22.1■■□□□ 1.13
NPHP4O75161 HIST2H2BB-201ENST00000449108 381 ntBASIC22.1■■□□□ 1.13
NPHP4O75161 FGFR3P1-201ENST00000449999 601 ntBASIC22.1■■□□□ 1.13
NPHP4O75161 CEP164P1-201ENST00000455142 418 ntBASIC22.1■■□□□ 1.13
NPHP4O75161 RN7SL713P-201ENST00000582127 302 ntBASIC22.1■■□□□ 1.13
NPHP4O75161 COX6A1P2-201ENST00000620597 330 ntBASIC22.1■■□□□ 1.13
NPHP4O75161 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
NPHP4O75161 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC22.1■■□□□ 1.13
NPHP4O75161 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC22.1■■□□□ 1.13
NPHP4O75161 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
NPHP4O75161 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC22.1■■□□□ 1.13
NPHP4O75161 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
NPHP4O75161 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC22.09■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms