Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
MSH4O15457 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
MSH4O15457 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
MSH4O15457 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
MSH4O15457 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
MSH4O15457 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
MSH4O15457 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
MSH4O15457 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC17.97■□□□□ 0.47
MSH4O15457 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
MSH4O15457 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
MSH4O15457 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
MSH4O15457 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
MSH4O15457 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
MSH4O15457 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
MSH4O15457 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
MSH4O15457 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
MSH4O15457 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
MSH4O15457 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC17.97■□□□□ 0.47
MSH4O15457 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
MSH4O15457 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
MSH4O15457 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC17.97■□□□□ 0.47
MSH4O15457 RASL12-203ENST00000434605 982 ntTSL 2 BASIC17.97■□□□□ 0.47
MSH4O15457 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC17.97■□□□□ 0.47
MSH4O15457 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
MSH4O15457 OARD1-208ENST00000469104 704 ntTSL 2 BASIC17.97■□□□□ 0.47
MSH4O15457 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC17.97■□□□□ 0.47
MSH4O15457 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC17.97■□□□□ 0.47
MSH4O15457 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
MSH4O15457 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC17.97■□□□□ 0.47
MSH4O15457 GREM1-201ENST00000560677 623 ntTSL 4 BASIC17.97■□□□□ 0.47
MSH4O15457 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC17.97■□□□□ 0.47
MSH4O15457 RNA5-8SN1-201ENST00000610460 153 ntBASIC17.97■□□□□ 0.47
MSH4O15457 RNA5-8SN5-202ENST00000612463 153 ntBASIC17.97■□□□□ 0.47
MSH4O15457 RNA5-8SN4-201ENST00000613359 153 ntBASIC17.97■□□□□ 0.47
MSH4O15457 RNA5-8SN5-201ENST00000619471 153 ntBASIC17.97■□□□□ 0.47
MSH4O15457 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC17.97■□□□□ 0.47
MSH4O15457 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC17.97■□□□□ 0.47
MSH4O15457 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
MSH4O15457 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
MSH4O15457 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
MSH4O15457 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
MSH4O15457 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
MSH4O15457 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
MSH4O15457 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
MSH4O15457 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.97■□□□□ 0.47
MSH4O15457 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.97■□□□□ 0.47
MSH4O15457 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
MSH4O15457 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
MSH4O15457 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
MSH4O15457 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
MSH4O15457 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC17.96■□□□□ 0.47
MSH4O15457 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
MSH4O15457 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.96■□□□□ 0.47
MSH4O15457 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.96■□□□□ 0.47
MSH4O15457 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
MSH4O15457 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.96■□□□□ 0.47
MSH4O15457 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC17.96■□□□□ 0.47
MSH4O15457 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
MSH4O15457 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
MSH4O15457 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
MSH4O15457 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
MSH4O15457 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
MSH4O15457 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
MSH4O15457 CALY-203ENST00000368558 825 ntTSL 5 BASIC17.96■□□□□ 0.47
MSH4O15457 AC136604.1-201ENST00000418535 575 ntBASIC17.96■□□□□ 0.47
MSH4O15457 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC17.96■□□□□ 0.47
MSH4O15457 SPTLC1P1-201ENST00000447199 261 ntBASIC17.96■□□□□ 0.47
MSH4O15457 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
MSH4O15457 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
MSH4O15457 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC17.96■□□□□ 0.47
MSH4O15457 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC17.96■□□□□ 0.47
MSH4O15457 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC17.96■□□□□ 0.47
MSH4O15457 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC17.96■□□□□ 0.47
MSH4O15457 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC17.96■□□□□ 0.47
MSH4O15457 AC104794.3-201ENST00000566840 1248 ntBASIC17.96■□□□□ 0.47
MSH4O15457 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
MSH4O15457 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC17.96■□□□□ 0.47
MSH4O15457 AC074044.1-201ENST00000609673 707 ntBASIC17.96■□□□□ 0.47
MSH4O15457 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC17.96■□□□□ 0.47
MSH4O15457 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
MSH4O15457 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC17.96■□□□□ 0.47
MSH4O15457 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC17.96■□□□□ 0.47
MSH4O15457 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
MSH4O15457 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC17.96■□□□□ 0.47
MSH4O15457 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
MSH4O15457 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
MSH4O15457 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
MSH4O15457 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC17.96■□□□□ 0.47
MSH4O15457 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
MSH4O15457 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
MSH4O15457 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
MSH4O15457 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC17.96■□□□□ 0.46
MSH4O15457 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
MSH4O15457 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.46
MSH4O15457 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
MSH4O15457 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC17.95■□□□□ 0.46
MSH4O15457 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
MSH4O15457 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC17.95■□□□□ 0.46
MSH4O15457 ACE-203ENST00000413513 2237 ntTSL 2 BASIC17.95■□□□□ 0.46
MSH4O15457 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms