Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM49D1C9J1S8 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM49D1C9J1S8 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM49D1C9J1S8 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM49D1C9J1S8 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM49D1C9J1S8 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
TRIM49D1C9J1S8 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM49D1C9J1S8 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM49D1C9J1S8 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM49D1C9J1S8 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC16.17■□□□□ 0.18
TRIM49D1C9J1S8 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM49D1C9J1S8 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM49D1C9J1S8 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.17■□□□□ 0.18
TRIM49D1C9J1S8 AC092127.1-201ENST00000567093 3455 ntBASIC16.17■□□□□ 0.18
TRIM49D1C9J1S8 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM49D1C9J1S8 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM49D1C9J1S8 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 AC090616.6-203ENST00000579186 1945 ntBASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 AC105250.1-201ENST00000509378 2057 ntBASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 KRT18P67-201ENST00000432816 1264 ntBASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 AF186996.4-201ENST00000467186 377 ntBASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 HS6ST1P1-201ENST00000481504 1234 ntBASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 AC108751.1-201ENST00000490852 363 ntBASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 AC148477.8-201ENST00000624298 468 ntBASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
TRIM49D1C9J1S8 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 MIR1224-201ENST00000408193 85 ntBASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 SLC4A1APP2-201ENST00000424054 1259 ntBASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 EHF-205ENST00000527935 557 ntTSL 2 BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 RPL28-209ENST00000560055 670 ntTSL 3 BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 QPRT-203ENST00000562473 579 ntTSL 3 BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 AL078644.1-201ENST00000609881 752 ntBASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC16.15■□□□□ 0.18
TRIM49D1C9J1S8 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms