Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC20.79■□□□□ 0.92
TRIM35Q9UPQ4 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC20.79■□□□□ 0.92
TRIM35Q9UPQ4 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC20.79■□□□□ 0.92
TRIM35Q9UPQ4 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
TRIM35Q9UPQ4 SRD5A3P1-201ENST00000603021 949 ntBASIC20.79■□□□□ 0.92
TRIM35Q9UPQ4 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM35Q9UPQ4 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
TRIM35Q9UPQ4 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC20.79■□□□□ 0.92
TRIM35Q9UPQ4 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
TRIM35Q9UPQ4 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC20.79■□□□□ 0.92
TRIM35Q9UPQ4 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM35Q9UPQ4 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC20.79■□□□□ 0.92
TRIM35Q9UPQ4 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM35Q9UPQ4 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TRIM35Q9UPQ4 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
TRIM35Q9UPQ4 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC20.78■□□□□ 0.92
TRIM35Q9UPQ4 AP005117.1-202ENST00000581724 1908 ntBASIC20.78■□□□□ 0.92
TRIM35Q9UPQ4 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM35Q9UPQ4 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
TRIM35Q9UPQ4 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC20.78■□□□□ 0.92
TRIM35Q9UPQ4 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM35Q9UPQ4 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM35Q9UPQ4 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM35Q9UPQ4 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
TRIM35Q9UPQ4 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM35Q9UPQ4 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC20.78■□□□□ 0.92
TRIM35Q9UPQ4 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM35Q9UPQ4 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC20.78■□□□□ 0.92
TRIM35Q9UPQ4 OARD1-208ENST00000469104 704 ntTSL 2 BASIC20.78■□□□□ 0.92
TRIM35Q9UPQ4 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC20.78■□□□□ 0.92
TRIM35Q9UPQ4 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM35Q9UPQ4 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC20.78■□□□□ 0.92
TRIM35Q9UPQ4 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC20.78■□□□□ 0.92
TRIM35Q9UPQ4 AC092364.2-202ENST00000597012 1073 ntBASIC20.78■□□□□ 0.92
TRIM35Q9UPQ4 5S_rRNA.22-201ENST00000614916 106 ntBASIC20.78■□□□□ 0.92
TRIM35Q9UPQ4 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC20.78■□□□□ 0.92
TRIM35Q9UPQ4 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC20.78■□□□□ 0.92
TRIM35Q9UPQ4 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
TRIM35Q9UPQ4 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM35Q9UPQ4 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC20.78■□□□□ 0.92
TRIM35Q9UPQ4 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC20.78■□□□□ 0.92
TRIM35Q9UPQ4 AMT-233ENST00000636522 1620 ntTSL 2 BASIC20.78■□□□□ 0.92
TRIM35Q9UPQ4 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TRIM35Q9UPQ4 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC20.78■□□□□ 0.92
TRIM35Q9UPQ4 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC20.78■□□□□ 0.92
TRIM35Q9UPQ4 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
TRIM35Q9UPQ4 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
TRIM35Q9UPQ4 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM35Q9UPQ4 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM35Q9UPQ4 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM35Q9UPQ4 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC20.77■□□□□ 0.92
TRIM35Q9UPQ4 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM35Q9UPQ4 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM35Q9UPQ4 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM35Q9UPQ4 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM35Q9UPQ4 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM35Q9UPQ4 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM35Q9UPQ4 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
TRIM35Q9UPQ4 FTH1-202ENST00000526640 786 ntTSL 2 BASIC20.77■□□□□ 0.92
TRIM35Q9UPQ4 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
TRIM35Q9UPQ4 MIR3197-201ENST00000582241 73 ntBASIC20.77■□□□□ 0.92
TRIM35Q9UPQ4 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
TRIM35Q9UPQ4 AL391069.4-201ENST00000609583 481 ntBASIC20.77■□□□□ 0.92
TRIM35Q9UPQ4 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM35Q9UPQ4 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
TRIM35Q9UPQ4 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC20.77■□□□□ 0.92
TRIM35Q9UPQ4 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM35Q9UPQ4 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
TRIM35Q9UPQ4 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
TRIM35Q9UPQ4 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM35Q9UPQ4 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
TRIM35Q9UPQ4 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
TRIM35Q9UPQ4 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
TRIM35Q9UPQ4 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
TRIM35Q9UPQ4 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
TRIM35Q9UPQ4 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
TRIM35Q9UPQ4 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.91
TRIM35Q9UPQ4 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM35Q9UPQ4 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC20.76■□□□□ 0.91
TRIM35Q9UPQ4 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC20.76■□□□□ 0.91
TRIM35Q9UPQ4 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM35Q9UPQ4 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC20.76■□□□□ 0.91
TRIM35Q9UPQ4 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC20.76■□□□□ 0.91
TRIM35Q9UPQ4 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC20.76■□□□□ 0.91
TRIM35Q9UPQ4 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
TRIM35Q9UPQ4 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC20.76■□□□□ 0.91
TRIM35Q9UPQ4 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC20.76■□□□□ 0.91
TRIM35Q9UPQ4 YTHDF3-AS1-201ENST00000603538 718 ntBASIC20.76■□□□□ 0.91
TRIM35Q9UPQ4 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC20.76■□□□□ 0.91
TRIM35Q9UPQ4 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM35Q9UPQ4 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM35Q9UPQ4 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM35Q9UPQ4 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM35Q9UPQ4 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
TRIM35Q9UPQ4 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC20.76■□□□□ 0.91
TRIM35Q9UPQ4 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM35Q9UPQ4 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC20.76■□□□□ 0.91
TRIM35Q9UPQ4 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM35Q9UPQ4 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM35Q9UPQ4 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms