Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC20.28■□□□□ 0.84
SCN11AQ9UI33 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SCN11AQ9UI33 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SCN11AQ9UI33 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SCN11AQ9UI33 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SCN11AQ9UI33 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
SCN11AQ9UI33 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SCN11AQ9UI33 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SCN11AQ9UI33 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SCN11AQ9UI33 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SCN11AQ9UI33 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SCN11AQ9UI33 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC20.27■□□□□ 0.84
SCN11AQ9UI33 POLL-217ENST00000628479 1953 ntTSL 5 BASIC20.27■□□□□ 0.84
SCN11AQ9UI33 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SCN11AQ9UI33 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SCN11AQ9UI33 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SCN11AQ9UI33 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
SCN11AQ9UI33 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SCN11AQ9UI33 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SCN11AQ9UI33 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC20.27■□□□□ 0.84
SCN11AQ9UI33 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.27■□□□□ 0.84
SCN11AQ9UI33 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SCN11AQ9UI33 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SCN11AQ9UI33 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC20.27■□□□□ 0.84
SCN11AQ9UI33 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC20.27■□□□□ 0.84
SCN11AQ9UI33 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC20.27■□□□□ 0.84
SCN11AQ9UI33 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC20.27■□□□□ 0.84
SCN11AQ9UI33 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
SCN11AQ9UI33 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC20.27■□□□□ 0.84
SCN11AQ9UI33 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
SCN11AQ9UI33 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
SCN11AQ9UI33 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
SCN11AQ9UI33 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC20.27■□□□□ 0.84
SCN11AQ9UI33 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SCN11AQ9UI33 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC20.27■□□□□ 0.84
SCN11AQ9UI33 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SCN11AQ9UI33 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
SCN11AQ9UI33 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
SCN11AQ9UI33 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
SCN11AQ9UI33 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC20.27■□□□□ 0.83
SCN11AQ9UI33 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
SCN11AQ9UI33 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 RPL8-205ENST00000527914 551 ntTSL 3 BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 AC009486.1-201ENST00000569860 813 ntBASIC20.26■□□□□ 0.83
SCN11AQ9UI33 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 LARP4-220ENST00000615080 856 ntTSL 5 BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 MCC-208ENST00000514701 2855 ntTSL 2 BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 BRWD1P1-201ENST00000401091 371 ntBASIC20.26■□□□□ 0.83
SCN11AQ9UI33 CNN2P10-201ENST00000443067 918 ntBASIC20.26■□□□□ 0.83
SCN11AQ9UI33 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SCN11AQ9UI33 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC20.25■□□□□ 0.83
SCN11AQ9UI33 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC20.25■□□□□ 0.83
SCN11AQ9UI33 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
SCN11AQ9UI33 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
SCN11AQ9UI33 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SCN11AQ9UI33 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SCN11AQ9UI33 RNF165-205ENST00000588679 2904 ntBASIC20.25■□□□□ 0.83
SCN11AQ9UI33 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC20.25■□□□□ 0.83
SCN11AQ9UI33 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SCN11AQ9UI33 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC20.25■□□□□ 0.83
SCN11AQ9UI33 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SCN11AQ9UI33 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SCN11AQ9UI33 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SCN11AQ9UI33 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
SCN11AQ9UI33 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms