Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VPS13AQ96RL7 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VPS13AQ96RL7 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC15.62■□□□□ 0.09
VPS13AQ96RL7 AZGP1P1-201ENST00000411909 902 ntBASIC15.62■□□□□ 0.09
VPS13AQ96RL7 PFN2-202ENST00000423691 911 ntTSL 2 BASIC15.62■□□□□ 0.09
VPS13AQ96RL7 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC15.62■□□□□ 0.09
VPS13AQ96RL7 ACR-203ENST00000529621 708 ntTSL 5 BASIC15.62■□□□□ 0.09
VPS13AQ96RL7 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC15.62■□□□□ 0.09
VPS13AQ96RL7 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC15.62■□□□□ 0.09
VPS13AQ96RL7 TP73-209ENST00000603362 1668 ntTSL 5 BASIC15.62■□□□□ 0.09
VPS13AQ96RL7 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VPS13AQ96RL7 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC15.62■□□□□ 0.09
VPS13AQ96RL7 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VPS13AQ96RL7 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VPS13AQ96RL7 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
VPS13AQ96RL7 AC060834.1-201ENST00000443027 2032 ntBASIC15.62■□□□□ 0.09
VPS13AQ96RL7 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VPS13AQ96RL7 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VPS13AQ96RL7 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
VPS13AQ96RL7 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
VPS13AQ96RL7 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VPS13AQ96RL7 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
VPS13AQ96RL7 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC15.62■□□□□ 0.09
VPS13AQ96RL7 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VPS13AQ96RL7 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
VPS13AQ96RL7 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VPS13AQ96RL7 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
VPS13AQ96RL7 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC15.61■□□□□ 0.09
VPS13AQ96RL7 AC093433.1-201ENST00000458048 571 ntBASIC15.61■□□□□ 0.09
VPS13AQ96RL7 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC15.61■□□□□ 0.09
VPS13AQ96RL7 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VPS13AQ96RL7 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VPS13AQ96RL7 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC15.61■□□□□ 0.09
VPS13AQ96RL7 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC15.61■□□□□ 0.09
VPS13AQ96RL7 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VPS13AQ96RL7 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
VPS13AQ96RL7 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
VPS13AQ96RL7 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VPS13AQ96RL7 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VPS13AQ96RL7 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VPS13AQ96RL7 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC15.61■□□□□ 0.09
VPS13AQ96RL7 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
VPS13AQ96RL7 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VPS13AQ96RL7 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
VPS13AQ96RL7 KRTAP19-9P-201ENST00000421795 191 ntBASIC15.61■□□□□ 0.09
VPS13AQ96RL7 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC15.61■□□□□ 0.09
VPS13AQ96RL7 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
VPS13AQ96RL7 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC15.61■□□□□ 0.09
VPS13AQ96RL7 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC15.61■□□□□ 0.09
VPS13AQ96RL7 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
VPS13AQ96RL7 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
VPS13AQ96RL7 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
VPS13AQ96RL7 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VPS13AQ96RL7 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15.61■□□□□ 0.09
VPS13AQ96RL7 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VPS13AQ96RL7 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC15.61■□□□□ 0.09
VPS13AQ96RL7 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VPS13AQ96RL7 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
VPS13AQ96RL7 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
VPS13AQ96RL7 AL596276.2-201ENST00000447525 331 ntBASIC15.61■□□□□ 0.09
VPS13AQ96RL7 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC15.61■□□□□ 0.09
VPS13AQ96RL7 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
VPS13AQ96RL7 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC15.61■□□□□ 0.09
VPS13AQ96RL7 AC025181.2-201ENST00000606994 802 ntBASIC15.61■□□□□ 0.09
VPS13AQ96RL7 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
VPS13AQ96RL7 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
VPS13AQ96RL7 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
VPS13AQ96RL7 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VPS13AQ96RL7 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
VPS13AQ96RL7 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC15.6■□□□□ 0.09
VPS13AQ96RL7 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC15.6■□□□□ 0.09
VPS13AQ96RL7 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
VPS13AQ96RL7 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VPS13AQ96RL7 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC15.6■□□□□ 0.09
VPS13AQ96RL7 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
VPS13AQ96RL7 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC15.6■□□□□ 0.09
VPS13AQ96RL7 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
VPS13AQ96RL7 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
VPS13AQ96RL7 AC009486.1-201ENST00000569860 813 ntBASIC15.6■□□□□ 0.09
VPS13AQ96RL7 CENPX-208ENST00000584347 799 ntTSL 2 BASIC15.6■□□□□ 0.09
VPS13AQ96RL7 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC15.6■□□□□ 0.09
VPS13AQ96RL7 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC15.6■□□□□ 0.09
VPS13AQ96RL7 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC15.6■□□□□ 0.09
VPS13AQ96RL7 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
VPS13AQ96RL7 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC15.6■□□□□ 0.09
VPS13AQ96RL7 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
VPS13AQ96RL7 AC068880.1-201ENST00000507289 2297 ntBASIC15.6■□□□□ 0.09
VPS13AQ96RL7 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
VPS13AQ96RL7 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
VPS13AQ96RL7 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
VPS13AQ96RL7 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC15.6■□□□□ 0.09
VPS13AQ96RL7 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC15.6■□□□□ 0.09
VPS13AQ96RL7 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC15.6■□□□□ 0.09
VPS13AQ96RL7 RN7SL774P-201ENST00000577467 290 ntBASIC15.6■□□□□ 0.09
VPS13AQ96RL7 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC15.6■□□□□ 0.09
VPS13AQ96RL7 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC15.6■□□□□ 0.09
VPS13AQ96RL7 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
VPS13AQ96RL7 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
VPS13AQ96RL7 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
VPS13AQ96RL7 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms